Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC24.94■■□□□ 1.58
LRRC53A6NM62 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
LRRC53A6NM62 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
LRRC53A6NM62 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC24.93■■□□□ 1.58
LRRC53A6NM62 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
LRRC53A6NM62 RARRES2P2-201ENST00000394842 485 ntBASIC24.93■■□□□ 1.58
LRRC53A6NM62 MIR6765-201ENST00000614092 87 ntBASIC24.93■■□□□ 1.58
LRRC53A6NM62 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
LRRC53A6NM62 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC24.92■■□□□ 1.58
LRRC53A6NM62 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
LRRC53A6NM62 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.92■■□□□ 1.58
LRRC53A6NM62 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.92■■□□□ 1.58
LRRC53A6NM62 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
LRRC53A6NM62 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
LRRC53A6NM62 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
LRRC53A6NM62 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC24.91■■□□□ 1.58
LRRC53A6NM62 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.91■■□□□ 1.58
LRRC53A6NM62 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
LRRC53A6NM62 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
LRRC53A6NM62 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
LRRC53A6NM62 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
LRRC53A6NM62 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
LRRC53A6NM62 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
LRRC53A6NM62 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
LRRC53A6NM62 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC24.9■■□□□ 1.58
LRRC53A6NM62 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
LRRC53A6NM62 AC012676.1-201ENST00000574705 1949 ntBASIC24.9■■□□□ 1.58
LRRC53A6NM62 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC24.9■■□□□ 1.58
LRRC53A6NM62 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC24.9■■□□□ 1.58
LRRC53A6NM62 U85056.1-201ENST00000616429 682 ntBASIC24.9■■□□□ 1.58
LRRC53A6NM62 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
LRRC53A6NM62 ME2-208ENST00000638937 2471 ntTSL 5 BASIC24.9■■□□□ 1.58
LRRC53A6NM62 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
LRRC53A6NM62 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC24.9■■□□□ 1.58
LRRC53A6NM62 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
LRRC53A6NM62 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
LRRC53A6NM62 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
LRRC53A6NM62 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.58
LRRC53A6NM62 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
LRRC53A6NM62 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC24.89■■□□□ 1.58
LRRC53A6NM62 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
LRRC53A6NM62 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
LRRC53A6NM62 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
LRRC53A6NM62 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
LRRC53A6NM62 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
LRRC53A6NM62 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC24.88■■□□□ 1.57
LRRC53A6NM62 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
LRRC53A6NM62 AL592295.1-201ENST00000400984 884 ntBASIC24.88■■□□□ 1.57
LRRC53A6NM62 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
LRRC53A6NM62 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
LRRC53A6NM62 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
LRRC53A6NM62 NFE2L3P1-201ENST00000588207 1959 ntBASIC24.87■■□□□ 1.57
LRRC53A6NM62 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC24.87■■□□□ 1.57
LRRC53A6NM62 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC24.87■■□□□ 1.57
LRRC53A6NM62 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.87■■□□□ 1.57
LRRC53A6NM62 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
LRRC53A6NM62 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LRRC53A6NM62 C9orf163-202ENST00000624034 2573 ntBASIC24.86■■□□□ 1.57
LRRC53A6NM62 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LRRC53A6NM62 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC24.86■■□□□ 1.57
LRRC53A6NM62 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
LRRC53A6NM62 HSD17B1P1-201ENST00000590052 955 ntBASIC24.86■■□□□ 1.57
LRRC53A6NM62 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.86■■□□□ 1.57
LRRC53A6NM62 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
LRRC53A6NM62 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
LRRC53A6NM62 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC24.85■■□□□ 1.57
LRRC53A6NM62 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
LRRC53A6NM62 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
LRRC53A6NM62 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.85■■□□□ 1.57
LRRC53A6NM62 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
LRRC53A6NM62 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.85■■□□□ 1.57
LRRC53A6NM62 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC24.85■■□□□ 1.57
LRRC53A6NM62 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
LRRC53A6NM62 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
LRRC53A6NM62 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
LRRC53A6NM62 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
LRRC53A6NM62 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
LRRC53A6NM62 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
LRRC53A6NM62 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
LRRC53A6NM62 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
LRRC53A6NM62 SSSCA1-AS1-201ENST00000567594 614 ntBASIC24.84■■□□□ 1.57
LRRC53A6NM62 AC129492.7-201ENST00000622992 756 ntBASIC24.84■■□□□ 1.57
LRRC53A6NM62 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
LRRC53A6NM62 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
LRRC53A6NM62 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.83■■□□□ 1.57
LRRC53A6NM62 LONRF2P2-201ENST00000439212 571 ntBASIC24.83■■□□□ 1.57
LRRC53A6NM62 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC24.83■■□□□ 1.57
LRRC53A6NM62 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.56
LRRC53A6NM62 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC24.83■■□□□ 1.56
LRRC53A6NM62 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.82■■□□□ 1.56
LRRC53A6NM62 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
LRRC53A6NM62 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC24.82■■□□□ 1.56
LRRC53A6NM62 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC24.82■■□□□ 1.56
LRRC53A6NM62 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
LRRC53A6NM62 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
LRRC53A6NM62 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
LRRC53A6NM62 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
LRRC53A6NM62 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
LRRC53A6NM62 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
LRRC53A6NM62 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC24.81■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms