Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 CTBP2P3-201ENST00000585629 1255 ntBASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 AL137783.1-201ENST00000623494 1896 ntBASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCSER1Q9C0I3 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 AC007292.2-201ENST00000593524 1812 ntBASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 AC114812.1-204ENST00000449669 728 ntBASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 AP001582.1-201ENST00000525856 295 ntBASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 ENPP7P5-201ENST00000541031 1031 ntBASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCSER1Q9C0I3 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 AC190387.1-201ENST00000551683 408 ntBASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 AC140912.1-201ENST00000577171 1054 ntBASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 AC008494.3-201ENST00000606615 944 ntBASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 AC005252.2-201ENST00000624630 1141 ntBASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
CCSER1Q9C0I3 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.08■□□□□ 0.33
CCSER1Q9C0I3 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.08■□□□□ 0.33
CCSER1Q9C0I3 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCSER1Q9C0I3 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
CCSER1Q9C0I3 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms