Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 AC067863.1-201ENST00000494933 530 ntBASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 AC243562.1-201ENST00000560672 389 ntBASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 AC009093.7-201ENST00000623853 1223 ntBASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 LINC01837-201ENST00000590021 1320 ntTSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 AC140479.7-201ENST00000636301 2332 ntBASIC14.4□□□□□ -0.11
DEPDC4Q8N2C3 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.4□□□□□ -0.11
DEPDC4Q8N2C3 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 PRYP6-201ENST00000514804 343 ntBASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 AC106028.4-201ENST00000614509 607 ntBASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 AC008267.7-201ENST00000624570 1194 ntBASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 PAX6-247ENST00000638965 979 ntTSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
DEPDC4Q8N2C3 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DEPDC4Q8N2C3 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DEPDC4Q8N2C3 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
DEPDC4Q8N2C3 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DEPDC4Q8N2C3 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
DEPDC4Q8N2C3 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms