Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 DRD5P1-201ENST00000456605 1438 ntBASIC16.7■□□□□ 0.26
VPS52Q8N1B4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.7■□□□□ 0.26
VPS52Q8N1B4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 ACKR1-201ENST00000368121 1240 ntBASIC16.69■□□□□ 0.26
VPS52Q8N1B4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 C2orf27AP3-201ENST00000434123 579 ntBASIC16.69■□□□□ 0.26
VPS52Q8N1B4 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AC022137.2-201ENST00000503482 481 ntBASIC16.69■□□□□ 0.26
VPS52Q8N1B4 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 KRT90P-201ENST00000549264 1064 ntBASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AC093813.1-201ENST00000605066 256 ntBASIC16.69■□□□□ 0.26
VPS52Q8N1B4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AL354718.3-201ENST00000616414 581 ntBASIC16.69■□□□□ 0.26
VPS52Q8N1B4 CR382287.1-201ENST00000623954 586 ntBASIC16.69■□□□□ 0.26
VPS52Q8N1B4 RHOXF1P1-202ENST00000635473 501 ntBASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AC126177.1-201ENST00000547829 2218 ntBASIC16.69■□□□□ 0.26
VPS52Q8N1B4 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 AP002414.2-201ENST00000591780 3365 ntBASIC16.69■□□□□ 0.26
VPS52Q8N1B4 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS52Q8N1B4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 PFN1P12-201ENST00000455938 534 ntBASIC16.68■□□□□ 0.26
VPS52Q8N1B4 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 GNRHR2-203ENST00000581100 1187 ntBASIC16.68■□□□□ 0.26
VPS52Q8N1B4 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS52Q8N1B4 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms