Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC19.79■□□□□ 0.76
USP54Q70EL1 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC19.79■□□□□ 0.76
USP54Q70EL1 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC19.79■□□□□ 0.76
USP54Q70EL1 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
USP54Q70EL1 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 PGAM1P5-201ENST00000548011 764 ntBASIC19.79■□□□□ 0.76
USP54Q70EL1 TPM1-223ENST00000560445 485 ntTSL 3 BASIC19.79■□□□□ 0.76
USP54Q70EL1 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
USP54Q70EL1 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
USP54Q70EL1 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.79■□□□□ 0.76
USP54Q70EL1 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.79■□□□□ 0.76
USP54Q70EL1 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC19.79■□□□□ 0.76
USP54Q70EL1 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC19.79■□□□□ 0.76
USP54Q70EL1 F10-203ENST00000409306 1450 ntTSL 3 BASIC19.79■□□□□ 0.76
USP54Q70EL1 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP54Q70EL1 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.79■□□□□ 0.76
USP54Q70EL1 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC19.78■□□□□ 0.76
USP54Q70EL1 AC074138.1-201ENST00000611182 1303 ntBASIC19.78■□□□□ 0.76
USP54Q70EL1 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
USP54Q70EL1 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC19.78■□□□□ 0.76
USP54Q70EL1 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC19.78■□□□□ 0.76
USP54Q70EL1 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP54Q70EL1 POU5F1P2-201ENST00000521750 823 ntBASIC19.78■□□□□ 0.76
USP54Q70EL1 MIR4522-201ENST00000584932 87 ntBASIC19.78■□□□□ 0.76
USP54Q70EL1 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC19.78■□□□□ 0.76
USP54Q70EL1 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC19.78■□□□□ 0.76
USP54Q70EL1 AC025262.2-201ENST00000623975 1056 ntBASIC19.78■□□□□ 0.76
USP54Q70EL1 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
USP54Q70EL1 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC19.78■□□□□ 0.76
USP54Q70EL1 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USP54Q70EL1 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP54Q70EL1 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.78■□□□□ 0.76
USP54Q70EL1 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP54Q70EL1 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19.78■□□□□ 0.76
USP54Q70EL1 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.78■□□□□ 0.76
USP54Q70EL1 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC19.78■□□□□ 0.76
USP54Q70EL1 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC19.78■□□□□ 0.76
USP54Q70EL1 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP54Q70EL1 MRPL37P1-201ENST00000592451 1337 ntBASIC19.78■□□□□ 0.76
USP54Q70EL1 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USP54Q70EL1 R3HDM2P2-201ENST00000401880 2116 ntBASIC19.78■□□□□ 0.76
USP54Q70EL1 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
USP54Q70EL1 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC19.78■□□□□ 0.76
USP54Q70EL1 AC093752.3-201ENST00000567343 901 ntBASIC19.78■□□□□ 0.76
USP54Q70EL1 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC19.78■□□□□ 0.76
USP54Q70EL1 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC19.78■□□□□ 0.76
USP54Q70EL1 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC19.78■□□□□ 0.76
USP54Q70EL1 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP54Q70EL1 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP54Q70EL1 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP54Q70EL1 PPT1-215ENST00000641471 2368 ntBASIC19.77■□□□□ 0.76
USP54Q70EL1 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP54Q70EL1 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
USP54Q70EL1 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC19.77■□□□□ 0.76
USP54Q70EL1 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC19.77■□□□□ 0.76
USP54Q70EL1 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP54Q70EL1 AC139712.1-201ENST00000378256 1875 ntBASIC19.77■□□□□ 0.76
USP54Q70EL1 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.77■□□□□ 0.76
USP54Q70EL1 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.77■□□□□ 0.76
USP54Q70EL1 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC19.77■□□□□ 0.76
USP54Q70EL1 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
USP54Q70EL1 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
USP54Q70EL1 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC19.77■□□□□ 0.76
USP54Q70EL1 AL583805.1-201ENST00000391389 531 ntBASIC19.77■□□□□ 0.76
USP54Q70EL1 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
USP54Q70EL1 AC130709.1-201ENST00000484779 1212 ntBASIC19.77■□□□□ 0.76
USP54Q70EL1 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC19.77■□□□□ 0.76
USP54Q70EL1 MRPL22P1-201ENST00000505398 616 ntBASIC19.77■□□□□ 0.76
USP54Q70EL1 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC19.77■□□□□ 0.76
USP54Q70EL1 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC19.77■□□□□ 0.76
USP54Q70EL1 MIR3147-201ENST00000577811 66 ntBASIC19.77■□□□□ 0.76
USP54Q70EL1 AC084781.1-201ENST00000613737 656 ntBASIC19.77■□□□□ 0.76
USP54Q70EL1 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
USP54Q70EL1 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
USP54Q70EL1 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.77■□□□□ 0.75
USP54Q70EL1 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP54Q70EL1 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP54Q70EL1 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC19.76■□□□□ 0.75
USP54Q70EL1 LINC02199-201ENST00000506655 2702 ntBASIC19.76■□□□□ 0.75
USP54Q70EL1 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
USP54Q70EL1 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP54Q70EL1 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC19.76■□□□□ 0.75
USP54Q70EL1 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP54Q70EL1 AC092580.1-201ENST00000433998 658 ntBASIC19.76■□□□□ 0.75
USP54Q70EL1 RN7SL8P-201ENST00000461771 266 ntBASIC19.76■□□□□ 0.75
USP54Q70EL1 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
USP54Q70EL1 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC19.76■□□□□ 0.75
USP54Q70EL1 AC092171.5-201ENST00000608012 942 ntBASIC19.76■□□□□ 0.75
USP54Q70EL1 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC19.76■□□□□ 0.75
USP54Q70EL1 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
USP54Q70EL1 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC19.76■□□□□ 0.75
USP54Q70EL1 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms