Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
MSH6P52701 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH6P52701 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC20.82■□□□□ 0.92
MSH6P52701 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.82■□□□□ 0.92
MSH6P52701 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH6P52701 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH6P52701 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
MSH6P52701 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH6P52701 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
MSH6P52701 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH6P52701 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
MSH6P52701 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH6P52701 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH6P52701 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH6P52701 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC20.82■□□□□ 0.92
MSH6P52701 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
MSH6P52701 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC20.82■□□□□ 0.92
MSH6P52701 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
MSH6P52701 HCG27-204ENST00000424675 895 ntTSL 3 BASIC20.82■□□□□ 0.92
MSH6P52701 AREG-202ENST00000502307 956 ntTSL 5 BASIC20.82■□□□□ 0.92
MSH6P52701 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MSH6P52701 EIF5AP2-201ENST00000585668 1047 ntBASIC20.82■□□□□ 0.92
MSH6P52701 SIGLEC18P-201ENST00000602271 909 ntBASIC20.82■□□□□ 0.92
MSH6P52701 AC084781.1-201ENST00000613737 656 ntBASIC20.82■□□□□ 0.92
MSH6P52701 AC138466.5-201ENST00000624002 808 ntBASIC20.82■□□□□ 0.92
MSH6P52701 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
MSH6P52701 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
MSH6P52701 AC015909.3-201ENST00000572855 1794 ntBASIC20.81■□□□□ 0.92
MSH6P52701 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
MSH6P52701 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC20.81■□□□□ 0.92
MSH6P52701 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
MSH6P52701 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
MSH6P52701 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 NHP2-202ENST00000314397 599 ntTSL 2 BASIC20.81■□□□□ 0.92
MSH6P52701 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 MBP-201ENST00000354542 575 ntTSL 2 BASIC20.81■□□□□ 0.92
MSH6P52701 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
MSH6P52701 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
MSH6P52701 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC20.81■□□□□ 0.92
MSH6P52701 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC20.81■□□□□ 0.92
MSH6P52701 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 DDX39AP1-201ENST00000445147 1181 ntBASIC20.81■□□□□ 0.92
MSH6P52701 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC20.81■□□□□ 0.92
MSH6P52701 DUTP3-201ENST00000450025 415 ntBASIC20.81■□□□□ 0.92
MSH6P52701 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC20.81■□□□□ 0.92
MSH6P52701 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC20.81■□□□□ 0.92
MSH6P52701 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC20.81■□□□□ 0.92
MSH6P52701 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MSH6P52701 AC011247.3-201ENST00000603297 438 ntBASIC20.81■□□□□ 0.92
MSH6P52701 KRT18P9-201ENST00000604826 1300 ntBASIC20.81■□□□□ 0.92
MSH6P52701 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
MSH6P52701 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC20.8■□□□□ 0.92
MSH6P52701 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC20.8■□□□□ 0.92
MSH6P52701 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.8■□□□□ 0.92
MSH6P52701 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
MSH6P52701 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC20.8■□□□□ 0.92
MSH6P52701 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC20.8■□□□□ 0.92
MSH6P52701 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC20.8■□□□□ 0.92
MSH6P52701 AC092638.2-201ENST00000441105 947 ntBASIC20.8■□□□□ 0.92
MSH6P52701 AC004837.1-201ENST00000446267 564 ntBASIC20.8■□□□□ 0.92
MSH6P52701 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC20.8■□□□□ 0.92
MSH6P52701 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC20.8■□□□□ 0.92
MSH6P52701 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC20.8■□□□□ 0.92
MSH6P52701 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC20.8■□□□□ 0.92
MSH6P52701 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC20.8■□□□□ 0.92
MSH6P52701 HKR1-225ENST00000592168 566 ntTSL 4 BASIC20.8■□□□□ 0.92
MSH6P52701 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC20.8■□□□□ 0.92
MSH6P52701 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
MSH6P52701 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
MSH6P52701 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 PCDHB19P-201ENST00000570871 2371 ntBASIC20.8■□□□□ 0.92
MSH6P52701 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC20.8■□□□□ 0.92
MSH6P52701 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH6P52701 AC020910.5-201ENST00000623668 1865 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms