Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CTCFP49711 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CTCFP49711 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CTCFP49711 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.64■□□□□ 0.41
CTCFP49711 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.64■□□□□ 0.41
CTCFP49711 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
CTCFP49711 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC17.64■□□□□ 0.41
CTCFP49711 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CTCFP49711 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC17.64■□□□□ 0.41
CTCFP49711 GHSR-202ENST00000427970 912 ntBASIC17.64■□□□□ 0.41
CTCFP49711 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC17.64■□□□□ 0.41
CTCFP49711 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CTCFP49711 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC17.64■□□□□ 0.41
CTCFP49711 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC17.64■□□□□ 0.41
CTCFP49711 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC17.64■□□□□ 0.41
CTCFP49711 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC17.64■□□□□ 0.41
CTCFP49711 AC087392.5-201ENST00000612517 489 ntBASIC17.64■□□□□ 0.41
CTCFP49711 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CTCFP49711 PCGF3-213ENST00000620529 1899 ntBASIC17.64■□□□□ 0.41
CTCFP49711 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CTCFP49711 AC008741.2-201ENST00000612792 3115 ntBASIC17.64■□□□□ 0.41
CTCFP49711 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CTCFP49711 FER1L4-210ENST00000615531 5998 ntBASIC17.64■□□□□ 0.41
CTCFP49711 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CTCFP49711 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.64■□□□□ 0.41
CTCFP49711 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.64■□□□□ 0.41
CTCFP49711 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CTCFP49711 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CTCFP49711 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CTCFP49711 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC17.64■□□□□ 0.41
CTCFP49711 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CTCFP49711 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
CTCFP49711 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.63■□□□□ 0.41
CTCFP49711 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.63■□□□□ 0.41
CTCFP49711 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CTCFP49711 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.63■□□□□ 0.41
CTCFP49711 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.63■□□□□ 0.41
CTCFP49711 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC17.63■□□□□ 0.41
CTCFP49711 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC17.63■□□□□ 0.41
CTCFP49711 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.63■□□□□ 0.41
CTCFP49711 AC004522.1-201ENST00000419978 654 ntBASIC17.63■□□□□ 0.41
CTCFP49711 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC17.63■□□□□ 0.41
CTCFP49711 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.63■□□□□ 0.41
CTCFP49711 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CTCFP49711 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.63■□□□□ 0.41
CTCFP49711 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC17.63■□□□□ 0.41
CTCFP49711 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.63■□□□□ 0.41
CTCFP49711 AC026803.1-201ENST00000569130 274 ntBASIC17.63■□□□□ 0.41
CTCFP49711 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.63■□□□□ 0.41
CTCFP49711 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
CTCFP49711 AC073911.3-201ENST00000624401 631 ntBASIC17.63■□□□□ 0.41
CTCFP49711 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CTCFP49711 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
CTCFP49711 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CTCFP49711 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.63■□□□□ 0.41
CTCFP49711 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.63■□□□□ 0.41
CTCFP49711 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CTCFP49711 AC004554.1-201ENST00000422830 1468 ntBASIC17.63■□□□□ 0.41
CTCFP49711 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.62■□□□□ 0.41
CTCFP49711 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.62■□□□□ 0.41
CTCFP49711 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CTCFP49711 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.62■□□□□ 0.41
CTCFP49711 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CTCFP49711 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.62■□□□□ 0.41
CTCFP49711 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CTCFP49711 SOD2-202ENST00000367054 815 ntTSL 2 BASIC17.62■□□□□ 0.41
CTCFP49711 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.62■□□□□ 0.41
CTCFP49711 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC17.62■□□□□ 0.41
CTCFP49711 AC008723.1-201ENST00000506922 207 ntBASIC17.62■□□□□ 0.41
CTCFP49711 AP002490.2-201ENST00000524791 560 ntBASIC17.62■□□□□ 0.41
CTCFP49711 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC17.62■□□□□ 0.41
CTCFP49711 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CTCFP49711 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
CTCFP49711 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms