Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC12.84□□□□□ -0.35
HOXA1P49639 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC12.84□□□□□ -0.35
HOXA1P49639 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
HOXA1P49639 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
HOXA1P49639 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXA1P49639 AL049840.3-201ENST00000602669 611 ntBASIC12.84□□□□□ -0.35
HOXA1P49639 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC12.84□□□□□ -0.35
HOXA1P49639 AL161645.1-201ENST00000622716 1255 ntBASIC12.84□□□□□ -0.35
HOXA1P49639 VPS51-217ENST00000639871 243 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXA1P49639 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HOXA1P49639 WASH6P-202ENST00000359512 1437 ntBASIC12.84□□□□□ -0.35
HOXA1P49639 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC12.84□□□□□ -0.35
HOXA1P49639 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
HOXA1P49639 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXA1P49639 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXA1P49639 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.84□□□□□ -0.35
HOXA1P49639 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 BCAR1-209ENST00000546196 1340 ntBASIC12.84□□□□□ -0.35
HOXA1P49639 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
HOXA1P49639 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
HOXA1P49639 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HOXA1P49639 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC12.84□□□□□ -0.35
HOXA1P49639 AC105250.1-201ENST00000509378 2057 ntBASIC12.84□□□□□ -0.35
HOXA1P49639 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC12.84□□□□□ -0.35
HOXA1P49639 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.83□□□□□ -0.35
HOXA1P49639 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
HOXA1P49639 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
HOXA1P49639 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC12.83□□□□□ -0.35
HOXA1P49639 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
HOXA1P49639 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
HOXA1P49639 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC12.83□□□□□ -0.35
HOXA1P49639 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.83□□□□□ -0.35
HOXA1P49639 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.83□□□□□ -0.35
HOXA1P49639 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.83□□□□□ -0.35
HOXA1P49639 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
HOXA1P49639 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXA1P49639 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
HOXA1P49639 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 ELN-211ENST00000414324 3139 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
HOXA1P49639 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
HOXA1P49639 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXA1P49639 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
HOXA1P49639 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
HOXA1P49639 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC12.83□□□□□ -0.36
HOXA1P49639 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 AC079781.3-201ENST00000449110 356 ntBASIC12.83□□□□□ -0.36
HOXA1P49639 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC12.83□□□□□ -0.36
HOXA1P49639 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
HOXA1P49639 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 AC243562.2-201ENST00000561247 970 ntBASIC12.83□□□□□ -0.36
HOXA1P49639 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC12.83□□□□□ -0.36
HOXA1P49639 MED16-214ENST00000617672 554 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXA1P49639 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXA1P49639 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXA1P49639 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 FGD5P1-202ENST00000614866 2498 ntBASIC12.83□□□□□ -0.36
HOXA1P49639 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXA1P49639 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC12.83□□□□□ -0.36
HOXA1P49639 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC12.83□□□□□ -0.36
HOXA1P49639 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HOXA1P49639 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.83□□□□□ -0.36
HOXA1P49639 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC12.82□□□□□ -0.36
HOXA1P49639 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
HOXA1P49639 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.82□□□□□ -0.36
HOXA1P49639 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.82□□□□□ -0.36
HOXA1P49639 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC12.82□□□□□ -0.36
HOXA1P49639 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC12.82□□□□□ -0.36
HOXA1P49639 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC12.82□□□□□ -0.36
HOXA1P49639 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
HOXA1P49639 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.82□□□□□ -0.36
HOXA1P49639 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC12.82□□□□□ -0.36
HOXA1P49639 DNM1P41-201ENST00000623634 3350 ntBASIC12.82□□□□□ -0.36
HOXA1P49639 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
HOXA1P49639 AL118506.1-201ENST00000601296 3082 ntBASIC12.82□□□□□ -0.36
HOXA1P49639 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HOXA1P49639 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms