Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
HADHAP40939 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
HADHAP40939 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HADHAP40939 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HADHAP40939 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HADHAP40939 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HADHAP40939 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HADHAP40939 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
HADHAP40939 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HADHAP40939 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
HADHAP40939 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HADHAP40939 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
HADHAP40939 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.56■□□□□ 0.08
HADHAP40939 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
HADHAP40939 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.56■□□□□ 0.08
HADHAP40939 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.56■□□□□ 0.08
HADHAP40939 GHSR-202ENST00000427970 912 ntBASIC15.56■□□□□ 0.08
HADHAP40939 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.56■□□□□ 0.08
HADHAP40939 AC104794.3-201ENST00000566840 1248 ntBASIC15.56■□□□□ 0.08
HADHAP40939 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.56■□□□□ 0.08
HADHAP40939 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.56■□□□□ 0.08
HADHAP40939 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.56■□□□□ 0.08
HADHAP40939 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.56■□□□□ 0.08
HADHAP40939 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.56■□□□□ 0.08
HADHAP40939 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.56■□□□□ 0.08
HADHAP40939 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
HADHAP40939 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.56■□□□□ 0.08
HADHAP40939 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
HADHAP40939 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HADHAP40939 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
HADHAP40939 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
HADHAP40939 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
HADHAP40939 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.55■□□□□ 0.08
HADHAP40939 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.55■□□□□ 0.08
HADHAP40939 SPDYE18-201ENST00000510091 1050 ntBASIC15.55■□□□□ 0.08
HADHAP40939 DOC2GP-202ENST00000514950 1163 ntBASIC15.55■□□□□ 0.08
HADHAP40939 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.55■□□□□ 0.08
HADHAP40939 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.55■□□□□ 0.08
HADHAP40939 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.55■□□□□ 0.08
HADHAP40939 AL158212.4-201ENST00000624062 1286 ntBASIC15.55■□□□□ 0.08
HADHAP40939 AL645728.2-202ENST00000641679 227 ntBASIC15.55■□□□□ 0.08
HADHAP40939 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
HADHAP40939 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
HADHAP40939 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
HADHAP40939 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.55■□□□□ 0.08
HADHAP40939 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
HADHAP40939 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HADHAP40939 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
HADHAP40939 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
HADHAP40939 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
HADHAP40939 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms