Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.7□□□□□ -0.06
MSX2P35548 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.7□□□□□ -0.06
MSX2P35548 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC14.7□□□□□ -0.06
MSX2P35548 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC14.7□□□□□ -0.06
MSX2P35548 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.7□□□□□ -0.06
MSX2P35548 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
MSX2P35548 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.7□□□□□ -0.06
MSX2P35548 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.7□□□□□ -0.06
MSX2P35548 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
MSX2P35548 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
MSX2P35548 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.7□□□□□ -0.06
MSX2P35548 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.7□□□□□ -0.06
MSX2P35548 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
MSX2P35548 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.7□□□□□ -0.06
MSX2P35548 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.7□□□□□ -0.06
MSX2P35548 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.7□□□□□ -0.06
MSX2P35548 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
MSX2P35548 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
MSX2P35548 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC14.69□□□□□ -0.06
MSX2P35548 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 AC136604.1-201ENST00000418535 575 ntBASIC14.69□□□□□ -0.06
MSX2P35548 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.69□□□□□ -0.06
MSX2P35548 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 AC027307.2-201ENST00000591252 911 ntBASIC14.69□□□□□ -0.06
MSX2P35548 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.69□□□□□ -0.06
MSX2P35548 AC099522.2-201ENST00000607001 744 ntBASIC14.69□□□□□ -0.06
MSX2P35548 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC14.69□□□□□ -0.06
MSX2P35548 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
MSX2P35548 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.69□□□□□ -0.06
MSX2P35548 VPS51-217ENST00000639871 243 ntTSL 5 BASIC14.69□□□□□ -0.06
MSX2P35548 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
MSX2P35548 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 MST1P2-201ENST00000457982 2291 ntBASIC14.69□□□□□ -0.06
MSX2P35548 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
MSX2P35548 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.69□□□□□ -0.06
MSX2P35548 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
MSX2P35548 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
MSX2P35548 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
MSX2P35548 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.68□□□□□ -0.06
MSX2P35548 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
MSX2P35548 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
MSX2P35548 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
MSX2P35548 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
MSX2P35548 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
MSX2P35548 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.68□□□□□ -0.06
MSX2P35548 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 AC099521.3-201ENST00000624251 2938 ntBASIC14.68□□□□□ -0.06
MSX2P35548 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
MSX2P35548 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms