Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC11.96□□□□□ -0.49
CXCL1P09341 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CXCL1P09341 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
CXCL1P09341 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
CXCL1P09341 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
CXCL1P09341 AMT-224ENST00000635808 1610 ntTSL 5 BASIC11.96□□□□□ -0.5
CXCL1P09341 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC11.96□□□□□ -0.5
CXCL1P09341 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CXCL1P09341 AC134407.2-201ENST00000625089 1978 ntBASIC11.96□□□□□ -0.5
CXCL1P09341 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.5
CXCL1P09341 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CXCL1P09341 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC11.96□□□□□ -0.5
CXCL1P09341 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC11.96□□□□□ -0.5
CXCL1P09341 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CXCL1P09341 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CXCL1P09341 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 PCDHB18P-202ENST00000526308 3197 ntBASIC11.95□□□□□ -0.5
CXCL1P09341 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 FLII-221ENST00000578558 2377 ntTSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 NME3-204ENST00000563498 920 ntTSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC11.95□□□□□ -0.5
CXCL1P09341 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 AC069148.1-201ENST00000608741 768 ntBASIC11.95□□□□□ -0.5
CXCL1P09341 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 AP000550.4-202ENST00000639755 178 ntBASIC11.95□□□□□ -0.5
CXCL1P09341 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 AC006504.4-201ENST00000592118 1568 ntBASIC11.95□□□□□ -0.5
CXCL1P09341 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC11.95□□□□□ -0.5
CXCL1P09341 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 CYP51A1P2-201ENST00000419457 1499 ntBASIC11.95□□□□□ -0.5
CXCL1P09341 AP001282.1-201ENST00000531301 1499 ntBASIC11.95□□□□□ -0.5
CXCL1P09341 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
CXCL1P09341 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC11.95□□□□□ -0.5
CXCL1P09341 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
CXCL1P09341 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 FAM90A12P-201ENST00000519497 2375 ntBASIC11.94□□□□□ -0.5
CXCL1P09341 FAM90A24P-201ENST00000520792 2369 ntBASIC11.94□□□□□ -0.5
CXCL1P09341 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
CXCL1P09341 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
CXCL1P09341 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC11.94□□□□□ -0.5
CXCL1P09341 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC11.94□□□□□ -0.5
CXCL1P09341 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC11.94□□□□□ -0.5
CXCL1P09341 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
CXCL1P09341 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms