Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DOAP06340 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.97■□□□□ 0.47
HLA-DOAP06340 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DOAP06340 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DOAP06340 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DOAP06340 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HLA-DOAP06340 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DOAP06340 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DOAP06340 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.97■□□□□ 0.47
HLA-DOAP06340 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
HLA-DOAP06340 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.97■□□□□ 0.47
HLA-DOAP06340 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC17.97■□□□□ 0.47
HLA-DOAP06340 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HLA-DOAP06340 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.97■□□□□ 0.47
HLA-DOAP06340 AL157414.3-201ENST00000624276 1954 ntBASIC17.97■□□□□ 0.47
HLA-DOAP06340 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DOAP06340 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
HLA-DOAP06340 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HLA-DOAP06340 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.96■□□□□ 0.47
HLA-DOAP06340 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
HLA-DOAP06340 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.96■□□□□ 0.47
HLA-DOAP06340 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 APOA2-204ENST00000464492 530 ntTSL 3 BASIC17.96■□□□□ 0.47
HLA-DOAP06340 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC17.96■□□□□ 0.47
HLA-DOAP06340 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HLA-DOAP06340 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC17.96■□□□□ 0.47
HLA-DOAP06340 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
HLA-DOAP06340 AC073413.1-201ENST00000603927 732 ntBASIC17.96■□□□□ 0.47
HLA-DOAP06340 AL096828.3-201ENST00000615354 462 ntBASIC17.96■□□□□ 0.47
HLA-DOAP06340 AC138466.3-201ENST00000619983 221 ntBASIC17.96■□□□□ 0.47
HLA-DOAP06340 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.96■□□□□ 0.47
HLA-DOAP06340 AC087481.3-201ENST00000602886 1894 ntBASIC17.96■□□□□ 0.47
HLA-DOAP06340 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HLA-DOAP06340 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HLA-DOAP06340 REXO1L4P-201ENST00000605109 1937 ntBASIC17.96■□□□□ 0.47
HLA-DOAP06340 CLUHP2-201ENST00000426660 1303 ntBASIC17.96■□□□□ 0.46
HLA-DOAP06340 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
HLA-DOAP06340 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
HLA-DOAP06340 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.46
HLA-DOAP06340 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 AC012508.2-201ENST00000567613 1472 ntBASIC17.95■□□□□ 0.46
HLA-DOAP06340 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HLA-DOAP06340 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HLA-DOAP06340 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms