Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AC104581.4-201ENST00000623126 3052 ntBASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AC041040.2-201ENST00000622926 2899 ntBASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AC027601.5-201ENST00000624065 2482 ntBASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AP001267.2-201ENST00000532619 2086 ntBASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AL035456.1-201ENST00000456064 1369 ntBASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AL133267.1-201ENST00000398220 340 ntBASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AL627223.1-201ENST00000416693 442 ntBASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 GPS2P2-201ENST00000430745 888 ntBASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 RBPMS2P1-201ENST00000437762 623 ntBASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 AC025181.2-201ENST00000606994 802 ntBASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TRIM49D1C9J1S8 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 SPDYE14P-201ENST00000442619 822 ntBASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 AL079307.3-201ENST00000556114 283 ntBASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 AL121894.2-201ENST00000602977 491 ntBASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 AL513210.1-201ENST00000629608 234 ntBASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TRIM49D1C9J1S8 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms