Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 AL391005.1-201ENST00000623953 2435 ntBASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 AC107464.3-201ENST00000609172 737 ntBASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 PLS3-210ENST00000626746 216 ntTSL 4 BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 AC090502.4-201ENST00000551714 1386 ntBASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 IL9RP3-201ENST00000442856 1674 ntBASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHANK3Q9BYB0 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 TSPY25P-201ENST00000429463 745 ntBASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 AC079112.1-201ENST00000454972 939 ntBASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 CHCHD2P9-201ENST00000461726 456 ntBASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 MIR6858-201ENST00000620733 67 ntBASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 AC027601.3-201ENST00000622907 509 ntBASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 RPSAP15-201ENST00000448168 861 ntBASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 AC130709.1-201ENST00000484779 1212 ntBASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 AC127024.7-201ENST00000625101 200 ntBASIC19.25■□□□□ 0.67
SHANK3Q9BYB0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 AC105137.3-201ENST00000617588 984 ntBASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 RNF165-205ENST00000588679 2904 ntBASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 ABR-203ENST00000536794 2213 ntTSL 2 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.24■□□□□ 0.67
SHANK3Q9BYB0 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 AL365203.3-201ENST00000609742 2057 ntBASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 PRORSD1P-202ENST00000563365 2154 ntBASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SHANK3Q9BYB0 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms