Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 PGF-202ENST00000405431 666 ntTSL 5 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 FAM21FP-201ENST00000426241 1131 ntBASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 NAA38-206ENST00000576384 424 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 Six3os1_5.1-201ENST00000611000 271 ntBASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 FLJ16779-201ENST00000612722 7638 ntBASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 C18orf15-201ENST00000623680 2534 ntBASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 AHCYP2-201ENST00000430630 1300 ntBASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 AL136379.1-201ENST00000623471 2642 ntBASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 RPS2P32-201ENST00000439199 892 ntBASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 YBX1P6-201ENST00000442962 1002 ntBASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 CSF2RBP1-201ENST00000447905 391 ntBASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 DUX4L45-201ENST00000566406 1057 ntBASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHMP4AQ9BY43 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 EIF3FP3-201ENST00000434851 1086 ntBASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 AC244669.2-201ENST00000612320 853 ntBASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 AC138951.2-201ENST00000623455 1161 ntBASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 LINC00554-201ENST00000564841 3011 ntBASIC19.48■□□□□ 0.71
CHMP4AQ9BY43 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms