Protein–RNA interactions for Protein: Q9BSH5

HDHD3, Haloacid dehalogenase-like hydrolase domain-containing protein 3, humanhuman

Predicted RBP Predictions only

Length 251 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3Q9BSH5 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HDHD3Q9BSH5 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 BX640514.1-201ENST00000583223 1918 ntBASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 REXO1L4P-201ENST00000605109 1937 ntBASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 SLED1-202ENST00000512051 380 ntBASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 AC026150.2-201ENST00000564693 1156 ntBASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 AC015910.1-201ENST00000579400 975 ntBASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 MIR4453-201ENST00000584019 89 ntBASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 AC007967.4-201ENST00000614700 386 ntBASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 RAB34-224ENST00000636513 888 ntTSL 5 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HDHD3Q9BSH5 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HDHD3Q9BSH5 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
HDHD3Q9BSH5 AC104581.4-201ENST00000623126 3052 ntBASIC13□□□□□ -0.33
HDHD3Q9BSH5 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HDHD3Q9BSH5 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HDHD3Q9BSH5 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HDHD3Q9BSH5 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
HDHD3Q9BSH5 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HDHD3Q9BSH5 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HDHD3Q9BSH5 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13□□□□□ -0.33
HDHD3Q9BSH5 STOM-202ENST00000347359 870 ntTSL 2 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC13□□□□□ -0.33
HDHD3Q9BSH5 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms