Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AL627223.1-201ENST00000416693 442 ntBASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 KRT8P48-201ENST00000515599 1220 ntBASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 AC092723.2-201ENST00000624955 793 ntBASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 LINC00628-201ENST00000628516 1289 ntBASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 WASH3P-207ENST00000560956 1394 ntBASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 FO538757.1-201ENST00000623083 1397 ntBASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.42□□□□□ -0.1
DEPDC4Q8N2C3 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 AL691432.1-201ENST00000596308 1422 ntBASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 ADH5P3-201ENST00000433842 1137 ntBASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 FAM86GP-201ENST00000448322 971 ntBASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 HLA-J-203ENST00000494367 1087 ntBASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 COA4-204ENST00000541455 1038 ntTSL 5 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 AC027612.4-201ENST00000605371 583 ntBASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.41□□□□□ -0.1
DEPDC4Q8N2C3 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 BNIP3P1-202ENST00000550043 1585 ntBASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
DEPDC4Q8N2C3 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms