Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 AC234644.1-201ENST00000406065 370 ntBASIC14.82□□□□□ -0.04
COL28A1Q2UY09 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 DEF8-202ENST00000418391 852 ntTSL 2 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 ACR-203ENST00000529621 708 ntTSL 5 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 AP001063.1-201ENST00000568332 529 ntBASIC14.82□□□□□ -0.04
COL28A1Q2UY09 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 METTL26-214ENST00000614890 801 ntTSL 3 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.82□□□□□ -0.04
COL28A1Q2UY09 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 RPL13AP25-201ENST00000484130 612 ntBASIC14.81□□□□□ -0.04
COL28A1Q2UY09 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 AC120045.2-201ENST00000567334 178 ntBASIC14.81□□□□□ -0.04
COL28A1Q2UY09 GNRHR2-203ENST00000581100 1187 ntBASIC14.81□□□□□ -0.04
COL28A1Q2UY09 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 AL451050.2-201ENST00000606967 682 ntBASIC14.81□□□□□ -0.04
COL28A1Q2UY09 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 NORAD-201ENST00000565493 5339 ntBASIC14.81□□□□□ -0.04
COL28A1Q2UY09 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL28A1Q2UY09 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
COL28A1Q2UY09 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms