Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 AL139384.1-201ENST00000612143 3047 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 AC124067.4-201ENST00000519691 2379 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 AL121949.3-201ENST00000406684 385 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 NME6-208ENST00000435684 599 ntTSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 BPIFB5P-201ENST00000457066 1099 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 AL022334.2-201ENST00000610000 484 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC9.16□□□□□ -0.94
HSPG2P98160 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 LY6E-215ENST00000523847 427 ntTSL 3 BASIC9.16□□□□□ -0.94
HSPG2P98160 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 AC092862.1-201ENST00000541534 533 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC9.16□□□□□ -0.94
HSPG2P98160 FBXO36P1-201ENST00000579006 471 ntBASIC9.16□□□□□ -0.94
HSPG2P98160 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC9.16□□□□□ -0.94
HSPG2P98160 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
HSPG2P98160 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC9.15□□□□□ -0.94
HSPG2P98160 TMBIM7P-202ENST00000641474 1516 ntBASIC9.15□□□□□ -0.94
HSPG2P98160 NHP2P1-201ENST00000335274 462 ntBASIC9.15□□□□□ -0.94
HSPG2P98160 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC9.15□□□□□ -0.94
HSPG2P98160 DPY19L2P5-201ENST00000456300 331 ntBASIC9.15□□□□□ -0.94
HSPG2P98160 AC090136.2-201ENST00000517809 420 ntBASIC9.15□□□□□ -0.94
HSPG2P98160 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.94
HSPG2P98160 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC9.15□□□□□ -0.94
HSPG2P98160 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC9.15□□□□□ -0.94
HSPG2P98160 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC9.15□□□□□ -0.94
HSPG2P98160 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC9.15□□□□□ -0.94
HSPG2P98160 AC080013.5-201ENST00000607044 679 ntBASIC9.15□□□□□ -0.94
HSPG2P98160 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC9.15□□□□□ -0.94
HSPG2P98160 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC9.15□□□□□ -0.94
HSPG2P98160 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 AC003102.2-201ENST00000589195 1469 ntBASIC9.15□□□□□ -0.94
HSPG2P98160 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC9.15□□□□□ -0.94
HSPG2P98160 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 SERF2-209ENST00000409646 559 ntTSL 4 BASIC9.15□□□□□ -0.94
HSPG2P98160 PGAM1P11-201ENST00000416729 680 ntBASIC9.15□□□□□ -0.94
HSPG2P98160 BCRP4-201ENST00000506079 804 ntBASIC9.15□□□□□ -0.94
HSPG2P98160 SEPHS2P1-201ENST00000511618 1162 ntBASIC9.15□□□□□ -0.94
HSPG2P98160 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC9.15□□□□□ -0.94
HSPG2P98160 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC9.15□□□□□ -0.94
HSPG2P98160 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC9.15□□□□□ -0.94
HSPG2P98160 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC9.15□□□□□ -0.94
HSPG2P98160 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
HSPG2P98160 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC9.15□□□□□ -0.94
HSPG2P98160 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC9.15□□□□□ -0.94
HSPG2P98160 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC9.15□□□□□ -0.94
HSPG2P98160 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC9.15□□□□□ -0.94
HSPG2P98160 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
HSPG2P98160 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
HSPG2P98160 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC9.15□□□□□ -0.95
HSPG2P98160 MIR1301-201ENST00000408518 82 ntBASIC9.15□□□□□ -0.95
HSPG2P98160 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC9.15□□□□□ -0.95
HSPG2P98160 AL451000.1-201ENST00000451300 1186 ntBASIC9.15□□□□□ -0.95
HSPG2P98160 SCARNA12-201ENST00000459155 270 ntBASIC9.15□□□□□ -0.95
HSPG2P98160 RHEB-207ENST00000496004 744 ntTSL 2 BASIC9.15□□□□□ -0.95
HSPG2P98160 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC9.15□□□□□ -0.95
HSPG2P98160 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC9.15□□□□□ -0.95
HSPG2P98160 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC9.15□□□□□ -0.95
HSPG2P98160 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC9.15□□□□□ -0.95
HSPG2P98160 AC007250.1-201ENST00000608934 338 ntBASIC9.15□□□□□ -0.95
HSPG2P98160 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC9.15□□□□□ -0.95
HSPG2P98160 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC9.15□□□□□ -0.95
HSPG2P98160 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC9.15□□□□□ -0.95
HSPG2P98160 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC9.15□□□□□ -0.95
HSPG2P98160 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
HSPG2P98160 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.95
HSPG2P98160 FAS-202ENST00000352159 1722 ntTSL 5 BASIC9.15□□□□□ -0.95
HSPG2P98160 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC9.15□□□□□ -0.95
HSPG2P98160 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
HSPG2P98160 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms