Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDL3P58872 KRT8P29-201ENST00000420409 1371 ntBASIC17.91■□□□□ 0.46
RHBDL3P58872 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDL3P58872 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.91■□□□□ 0.46
RHBDL3P58872 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDL3P58872 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
RHBDL3P58872 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.91■□□□□ 0.46
RHBDL3P58872 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.9■□□□□ 0.46
RHBDL3P58872 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.9■□□□□ 0.46
RHBDL3P58872 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.9■□□□□ 0.46
RHBDL3P58872 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
RHBDL3P58872 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.9■□□□□ 0.46
RHBDL3P58872 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
RHBDL3P58872 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.9■□□□□ 0.46
RHBDL3P58872 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.9■□□□□ 0.46
RHBDL3P58872 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 SERF2-209ENST00000409646 559 ntTSL 4 BASIC17.9■□□□□ 0.46
RHBDL3P58872 SLC25A24P2-201ENST00000415059 510 ntBASIC17.9■□□□□ 0.46
RHBDL3P58872 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC17.9■□□□□ 0.46
RHBDL3P58872 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.9■□□□□ 0.46
RHBDL3P58872 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC17.9■□□□□ 0.46
RHBDL3P58872 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 BNIP3P13-201ENST00000599968 566 ntBASIC17.9■□□□□ 0.46
RHBDL3P58872 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC17.9■□□□□ 0.46
RHBDL3P58872 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC17.9■□□□□ 0.46
RHBDL3P58872 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.9■□□□□ 0.46
RHBDL3P58872 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.9■□□□□ 0.46
RHBDL3P58872 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.9■□□□□ 0.46
RHBDL3P58872 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.9■□□□□ 0.46
RHBDL3P58872 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.9■□□□□ 0.46
RHBDL3P58872 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
RHBDL3P58872 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
RHBDL3P58872 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
RHBDL3P58872 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.89■□□□□ 0.46
RHBDL3P58872 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC17.89■□□□□ 0.46
RHBDL3P58872 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
RHBDL3P58872 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.89■□□□□ 0.46
RHBDL3P58872 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
RHBDL3P58872 AC003102.2-201ENST00000589195 1469 ntBASIC17.89■□□□□ 0.45
RHBDL3P58872 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.89■□□□□ 0.45
RHBDL3P58872 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.89■□□□□ 0.45
RHBDL3P58872 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.89■□□□□ 0.45
RHBDL3P58872 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.89■□□□□ 0.45
RHBDL3P58872 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.89■□□□□ 0.45
RHBDL3P58872 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.89■□□□□ 0.45
RHBDL3P58872 RNMTL1P1-201ENST00000454103 560 ntBASIC17.89■□□□□ 0.45
RHBDL3P58872 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.89■□□□□ 0.45
RHBDL3P58872 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.89■□□□□ 0.45
RHBDL3P58872 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.89■□□□□ 0.45
RHBDL3P58872 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.89■□□□□ 0.45
RHBDL3P58872 AL023803.2-201ENST00000620080 638 ntBASIC17.89■□□□□ 0.45
RHBDL3P58872 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.89■□□□□ 0.45
RHBDL3P58872 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC17.89■□□□□ 0.45
RHBDL3P58872 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
RHBDL3P58872 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
RHBDL3P58872 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 SHC1P1-201ENST00000425230 1745 ntBASIC17.89■□□□□ 0.45
RHBDL3P58872 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.89■□□□□ 0.45
RHBDL3P58872 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RHBDL3P58872 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RHBDL3P58872 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17.88■□□□□ 0.45
RHBDL3P58872 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDL3P58872 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.88■□□□□ 0.45
RHBDL3P58872 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDL3P58872 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDL3P58872 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RHBDL3P58872 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.88■□□□□ 0.45
RHBDL3P58872 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RHBDL3P58872 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms