Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
FOXA3P55318 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
FOXA3P55318 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC11.61□□□□□ -0.55
FOXA3P55318 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
FOXA3P55318 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC11.61□□□□□ -0.55
FOXA3P55318 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC11.6□□□□□ -0.55
FOXA3P55318 AC152010.1-201ENST00000415779 2006 ntBASIC11.6□□□□□ -0.55
FOXA3P55318 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
FOXA3P55318 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
FOXA3P55318 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC11.6□□□□□ -0.55
FOXA3P55318 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 TMPOP1-202ENST00000424642 1267 ntBASIC11.6□□□□□ -0.55
FOXA3P55318 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 PHKG1P2-201ENST00000457537 863 ntBASIC11.6□□□□□ -0.55
FOXA3P55318 CXCL1P1-201ENST00000502804 216 ntBASIC11.6□□□□□ -0.55
FOXA3P55318 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 IRF8-202ENST00000562492 946 ntTSL 3 BASIC11.6□□□□□ -0.55
FOXA3P55318 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC11.6□□□□□ -0.55
FOXA3P55318 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC11.6□□□□□ -0.55
FOXA3P55318 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
FOXA3P55318 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
FOXA3P55318 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC11.6□□□□□ -0.55
FOXA3P55318 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC11.6□□□□□ -0.55
FOXA3P55318 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 AC015802.1-201ENST00000588104 1449 ntBASIC11.6□□□□□ -0.55
FOXA3P55318 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC11.6□□□□□ -0.55
FOXA3P55318 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
FOXA3P55318 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
FOXA3P55318 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
FOXA3P55318 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC11.59□□□□□ -0.55
FOXA3P55318 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
FOXA3P55318 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC11.59□□□□□ -0.55
FOXA3P55318 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
FOXA3P55318 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
FOXA3P55318 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms