Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
MSX2P35548 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.72□□□□□ -0.05
MSX2P35548 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.72□□□□□ -0.05
MSX2P35548 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
MSX2P35548 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
MSX2P35548 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 AZGP1P1-201ENST00000411909 902 ntBASIC14.72□□□□□ -0.05
MSX2P35548 CRCP-205ENST00000431089 942 ntTSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.72□□□□□ -0.05
MSX2P35548 RNA5SP415-201ENST00000517246 115 ntBASIC14.72□□□□□ -0.05
MSX2P35548 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
MSX2P35548 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.72□□□□□ -0.05
MSX2P35548 KRT19P2-202ENST00000557173 1012 ntBASIC14.72□□□□□ -0.05
MSX2P35548 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.72□□□□□ -0.05
MSX2P35548 AC116407.3-201ENST00000623905 1129 ntBASIC14.72□□□□□ -0.05
MSX2P35548 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
MSX2P35548 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.72□□□□□ -0.05
MSX2P35548 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.72□□□□□ -0.05
MSX2P35548 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
MSX2P35548 AC005562.1-201ENST00000583030 3219 ntBASIC14.71□□□□□ -0.05
MSX2P35548 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.71□□□□□ -0.05
MSX2P35548 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC14.71□□□□□ -0.05
MSX2P35548 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
MSX2P35548 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.71□□□□□ -0.05
MSX2P35548 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
MSX2P35548 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
MSX2P35548 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.71□□□□□ -0.05
MSX2P35548 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.71□□□□□ -0.05
MSX2P35548 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC14.71□□□□□ -0.05
MSX2P35548 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.71□□□□□ -0.05
MSX2P35548 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 EEF1DP4-201ENST00000446006 880 ntBASIC14.71□□□□□ -0.05
MSX2P35548 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.71□□□□□ -0.05
MSX2P35548 AL139010.1-201ENST00000454878 894 ntBASIC14.71□□□□□ -0.05
MSX2P35548 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.71□□□□□ -0.05
MSX2P35548 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
MSX2P35548 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
MSX2P35548 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.71□□□□□ -0.05
MSX2P35548 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
MSX2P35548 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.06
MSX2P35548 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
MSX2P35548 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.71□□□□□ -0.06
MSX2P35548 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
MSX2P35548 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
MSX2P35548 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
MSX2P35548 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.7□□□□□ -0.06
MSX2P35548 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
MSX2P35548 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
MSX2P35548 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
MSX2P35548 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms