Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SHMT2P34897 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.07■□□□□ 0
SHMT2P34897 RPL5P21-201ENST00000404620 815 ntBASIC15.07■□□□□ 0
SHMT2P34897 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 AC011495.1-201ENST00000498085 584 ntBASIC15.07■□□□□ 0
SHMT2P34897 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.07■□□□□ 0
SHMT2P34897 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.07■□□□□ 0
SHMT2P34897 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.07■□□□□ 0
SHMT2P34897 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.07■□□□□ 0
SHMT2P34897 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SHMT2P34897 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
SHMT2P34897 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
SHMT2P34897 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.07■□□□□ 0
SHMT2P34897 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 CTBP2P3-201ENST00000585629 1255 ntBASIC15.07■□□□□ 0
SHMT2P34897 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.07■□□□□ 0
SHMT2P34897 AC133539.2-201ENST00000604757 467 ntBASIC15.07■□□□□ 0
SHMT2P34897 AC012645.4-201ENST00000610691 1061 ntBASIC15.07■□□□□ 0
SHMT2P34897 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.07■□□□□ 0
SHMT2P34897 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SHMT2P34897 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
SHMT2P34897 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SHMT2P34897 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
SHMT2P34897 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 CU639417.3-201ENST00000624240 1404 ntBASIC15.07■□□□□ 0
SHMT2P34897 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SHMT2P34897 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.07■□□□□ 0
SHMT2P34897 AC105250.1-201ENST00000509378 2057 ntBASIC15.07■□□□□ 0
SHMT2P34897 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.07■□□□□ 0
SHMT2P34897 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.07■□□□□ 0
SHMT2P34897 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 AC084364.1-201ENST00000551967 1556 ntBASIC15.07■□□□□ 0
SHMT2P34897 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
SHMT2P34897 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SHMT2P34897 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.06■□□□□ 0
SHMT2P34897 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.06■□□□□ 0
SHMT2P34897 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.06■□□□□ 0
SHMT2P34897 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.06■□□□□ 0
SHMT2P34897 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.06■□□□□ 0
SHMT2P34897 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.06■□□□□ 0
SHMT2P34897 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.06■□□□□ 0
SHMT2P34897 VDAC1P7-201ENST00000462417 847 ntBASIC15.06■□□□□ 0
SHMT2P34897 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.06■□□□□ 0
SHMT2P34897 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.06■□□□□ 0
SHMT2P34897 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.06■□□□□ 0
SHMT2P34897 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.06■□□□□ 0
SHMT2P34897 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
SHMT2P34897 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.06■□□□□ 0
SHMT2P34897 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
SHMT2P34897 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms