Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
MSX1P28360 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX1P28360 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX1P28360 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.1□□□□□ -0.15
MSX1P28360 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX1P28360 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
MSX1P28360 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
MSX1P28360 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
MSX1P28360 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX1P28360 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
MSX1P28360 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
MSX1P28360 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.09□□□□□ -0.15
MSX1P28360 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX1P28360 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.09□□□□□ -0.15
MSX1P28360 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.09□□□□□ -0.15
MSX1P28360 HNRNPA1P23-201ENST00000491091 1133 ntBASIC14.09□□□□□ -0.15
MSX1P28360 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX1P28360 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.09□□□□□ -0.15
MSX1P28360 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.09□□□□□ -0.15
MSX1P28360 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX1P28360 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.09□□□□□ -0.15
MSX1P28360 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.09□□□□□ -0.15
MSX1P28360 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC14.09□□□□□ -0.15
MSX1P28360 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.09□□□□□ -0.15
MSX1P28360 AC092068.1-201ENST00000592525 454 ntTSL 2 BASIC14.09□□□□□ -0.15
MSX1P28360 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
MSX1P28360 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.09□□□□□ -0.15
MSX1P28360 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 AP003400.6-201ENST00000624698 740 ntBASIC14.09□□□□□ -0.15
MSX1P28360 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.09□□□□□ -0.15
MSX1P28360 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 C18orf15-201ENST00000623680 2534 ntBASIC14.09□□□□□ -0.15
MSX1P28360 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
MSX1P28360 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.09□□□□□ -0.15
MSX1P28360 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
MSX1P28360 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
MSX1P28360 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.09□□□□□ -0.15
MSX1P28360 INTS4P2-202ENST00000614726 2019 ntBASIC14.08□□□□□ -0.15
MSX1P28360 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
MSX1P28360 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
MSX1P28360 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.08□□□□□ -0.15
MSX1P28360 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
MSX1P28360 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
MSX1P28360 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
MSX1P28360 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.08□□□□□ -0.15
MSX1P28360 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
MSX1P28360 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.08□□□□□ -0.15
MSX1P28360 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
MSX1P28360 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.08□□□□□ -0.16
MSX1P28360 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.08□□□□□ -0.16
MSX1P28360 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
MSX1P28360 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
MSX1P28360 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 AC104457.1-201ENST00000401024 814 ntBASIC14.08□□□□□ -0.16
MSX1P28360 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 VDAC1P7-201ENST00000462417 847 ntBASIC14.08□□□□□ -0.16
MSX1P28360 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.08□□□□□ -0.16
MSX1P28360 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.08□□□□□ -0.16
MSX1P28360 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
MSX1P28360 ENPP7P5-201ENST00000541031 1031 ntBASIC14.08□□□□□ -0.16
MSX1P28360 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.08□□□□□ -0.16
MSX1P28360 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms