Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGB1P09429 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGB1P09429 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGB1P09429 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGB1P09429 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.11■□□□□ 0.49
HMGB1P09429 AC120045.2-201ENST00000567334 178 ntBASIC18.11■□□□□ 0.49
HMGB1P09429 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGB1P09429 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.11■□□□□ 0.49
HMGB1P09429 AC004233.3-201ENST00000607794 1269 ntBASIC18.11■□□□□ 0.49
HMGB1P09429 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 LILRP1-201ENST00000444199 1370 ntBASIC18.11■□□□□ 0.49
HMGB1P09429 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGB1P09429 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGB1P09429 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 CICP24-201ENST00000605464 2705 ntBASIC18.11■□□□□ 0.49
HMGB1P09429 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGB1P09429 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGB1P09429 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC18.1■□□□□ 0.49
HMGB1P09429 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HMGB1P09429 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 AL158070.2-201ENST00000623713 1621 ntBASIC18.1■□□□□ 0.49
HMGB1P09429 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 AC007541.1-201ENST00000570282 1469 ntBASIC18.1■□□□□ 0.49
HMGB1P09429 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HMGB1P09429 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HMGB1P09429 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGB1P09429 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC18.1■□□□□ 0.49
HMGB1P09429 BCRP1-201ENST00000444246 691 ntBASIC18.1■□□□□ 0.49
HMGB1P09429 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGB1P09429 AC092552.1-201ENST00000547243 906 ntBASIC18.1■□□□□ 0.49
HMGB1P09429 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.1■□□□□ 0.49
HMGB1P09429 SPCS2P1-201ENST00000561636 679 ntBASIC18.1■□□□□ 0.49
HMGB1P09429 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGB1P09429 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.1■□□□□ 0.49
HMGB1P09429 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.1■□□□□ 0.49
HMGB1P09429 TMEM261P1-201ENST00000604899 340 ntBASIC18.1■□□□□ 0.49
HMGB1P09429 MIR8072-201ENST00000614241 80 ntBASIC18.1■□□□□ 0.49
HMGB1P09429 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGB1P09429 AC007431.3-201ENST00000623221 587 ntBASIC18.1■□□□□ 0.49
HMGB1P09429 PRSS30P-206ENST00000641773 873 ntBASIC18.1■□□□□ 0.49
HMGB1P09429 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
HMGB1P09429 AL359258.3-201ENST00000622910 2331 ntBASIC18.1■□□□□ 0.49
HMGB1P09429 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGB1P09429 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGB1P09429 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB1P09429 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
HMGB1P09429 FLJ16779-201ENST00000612722 7638 ntBASIC18.09■□□□□ 0.49
HMGB1P09429 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.09■□□□□ 0.49
HMGB1P09429 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HMGB1P09429 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB1P09429 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB1P09429 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB1P09429 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB1P09429 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGB1P09429 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB1P09429 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
HMGB1P09429 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGB1P09429 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.09■□□□□ 0.49
HMGB1P09429 AC123567.1-201ENST00000548294 1261 ntBASIC18.09■□□□□ 0.49
HMGB1P09429 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGB1P09429 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGB1P09429 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGB1P09429 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.09■□□□□ 0.49
HMGB1P09429 AL132655.2-201ENST00000596276 594 ntBASIC18.09■□□□□ 0.49
HMGB1P09429 LINC02560-201ENST00000596379 459 ntBASIC18.09■□□□□ 0.49
HMGB1P09429 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGB1P09429 BX539320.1-201ENST00000623759 877 ntBASIC18.09■□□□□ 0.49
HMGB1P09429 AC008761.3-201ENST00000624803 892 ntBASIC18.09■□□□□ 0.49
HMGB1P09429 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB1P09429 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC18.09■□□□□ 0.49
HMGB1P09429 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGB1P09429 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB1P09429 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB1P09429 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGB1P09429 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms