Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CXCL1P09341 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC11.97□□□□□ -0.49
CXCL1P09341 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC11.97□□□□□ -0.49
CXCL1P09341 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 AC012569.1-201ENST00000591191 1524 ntBASIC11.97□□□□□ -0.49
CXCL1P09341 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
CXCL1P09341 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 PAN3-AS1-201ENST00000563843 1351 ntBASIC11.97□□□□□ -0.49
CXCL1P09341 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC11.97□□□□□ -0.49
CXCL1P09341 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
CXCL1P09341 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
CXCL1P09341 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC11.97□□□□□ -0.49
CXCL1P09341 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC11.97□□□□□ -0.49
CXCL1P09341 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC11.97□□□□□ -0.49
CXCL1P09341 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC11.97□□□□□ -0.49
CXCL1P09341 ATP5G2P1-201ENST00000433580 426 ntBASIC11.97□□□□□ -0.49
CXCL1P09341 TMEM198B-204ENST00000484016 896 ntBASIC11.97□□□□□ -0.49
CXCL1P09341 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC11.97□□□□□ -0.49
CXCL1P09341 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC11.97□□□□□ -0.49
CXCL1P09341 SDCCAG3P1-201ENST00000589292 1150 ntBASIC11.97□□□□□ -0.49
CXCL1P09341 MTDHP4-201ENST00000600287 670 ntBASIC11.97□□□□□ -0.49
CXCL1P09341 BCL10-202ENST00000620248 774 ntTSL 5 BASIC11.97□□□□□ -0.49
CXCL1P09341 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CXCL1P09341 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC11.97□□□□□ -0.49
CXCL1P09341 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CXCL1P09341 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CXCL1P09341 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CXCL1P09341 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC11.97□□□□□ -0.49
CXCL1P09341 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC11.97□□□□□ -0.49
CXCL1P09341 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
CXCL1P09341 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CXCL1P09341 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC11.97□□□□□ -0.49
CXCL1P09341 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC11.96□□□□□ -0.49
CXCL1P09341 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
CXCL1P09341 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 AC073548.1-201ENST00000624088 1882 ntBASIC11.96□□□□□ -0.49
CXCL1P09341 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC11.96□□□□□ -0.49
CXCL1P09341 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC11.96□□□□□ -0.49
CXCL1P09341 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
CXCL1P09341 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC11.96□□□□□ -0.49
CXCL1P09341 AL645939.2-201ENST00000427340 991 ntBASIC11.96□□□□□ -0.49
CXCL1P09341 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC11.96□□□□□ -0.49
CXCL1P09341 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC11.96□□□□□ -0.49
CXCL1P09341 SCARNA2-201ENST00000458748 420 ntBASIC11.96□□□□□ -0.49
CXCL1P09341 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC11.96□□□□□ -0.49
CXCL1P09341 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC11.96□□□□□ -0.49
CXCL1P09341 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 METTL23-204ENST00000586752 904 ntTSL 2 BASIC11.96□□□□□ -0.49
CXCL1P09341 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 MTDHP3-201ENST00000594186 672 ntBASIC11.96□□□□□ -0.49
CXCL1P09341 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC11.96□□□□□ -0.49
CXCL1P09341 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CXCL1P09341 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms