Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.52■□□□□ 0.08
VIMP08670 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.52■□□□□ 0.08
VIMP08670 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.52■□□□□ 0.08
VIMP08670 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.52■□□□□ 0.08
VIMP08670 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 AC109635.5-201ENST00000533593 962 ntBASIC15.52■□□□□ 0.08
VIMP08670 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.52■□□□□ 0.08
VIMP08670 AL009183.1-201ENST00000603760 355 ntBASIC15.52■□□□□ 0.08
VIMP08670 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.52■□□□□ 0.08
VIMP08670 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VIMP08670 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC15.52■□□□□ 0.08
VIMP08670 NPAP1P7-201ENST00000613027 823 ntBASIC15.52■□□□□ 0.08
VIMP08670 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.52■□□□□ 0.08
VIMP08670 MIR1199-201ENST00000621445 119 ntBASIC15.52■□□□□ 0.08
VIMP08670 AC004790.2-201ENST00000623588 572 ntBASIC15.52■□□□□ 0.08
VIMP08670 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.52■□□□□ 0.08
VIMP08670 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
VIMP08670 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
VIMP08670 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VIMP08670 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.52■□□□□ 0.07
VIMP08670 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
VIMP08670 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.52■□□□□ 0.07
VIMP08670 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VIMP08670 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VIMP08670 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC15.52■□□□□ 0.07
VIMP08670 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.52■□□□□ 0.07
VIMP08670 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC15.52■□□□□ 0.07
VIMP08670 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VIMP08670 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VIMP08670 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VIMP08670 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.52■□□□□ 0.07
VIMP08670 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VIMP08670 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VIMP08670 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
VIMP08670 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC15.51■□□□□ 0.07
VIMP08670 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.51■□□□□ 0.07
VIMP08670 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.51■□□□□ 0.07
VIMP08670 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
VIMP08670 PHKG1P2-201ENST00000457537 863 ntBASIC15.51■□□□□ 0.07
VIMP08670 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.51■□□□□ 0.07
VIMP08670 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.51■□□□□ 0.07
VIMP08670 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
VIMP08670 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.51■□□□□ 0.07
VIMP08670 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.51■□□□□ 0.07
VIMP08670 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
VIMP08670 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.51■□□□□ 0.07
VIMP08670 AP000845.1-201ENST00000581677 2131 ntBASIC15.51■□□□□ 0.07
VIMP08670 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 AC005562.1-201ENST00000583030 3219 ntBASIC15.51■□□□□ 0.07
VIMP08670 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.51■□□□□ 0.07
VIMP08670 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.51■□□□□ 0.07
VIMP08670 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC15.51■□□□□ 0.07
VIMP08670 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.51■□□□□ 0.07
VIMP08670 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VIMP08670 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
VIMP08670 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
VIMP08670 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC15.5■□□□□ 0.07
VIMP08670 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.5■□□□□ 0.07
VIMP08670 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC15.5■□□□□ 0.07
VIMP08670 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC15.5■□□□□ 0.07
VIMP08670 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
VIMP08670 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VIMP08670 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
VIMP08670 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VIMP08670 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms