Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC19.88■□□□□ 0.77
COL3A1P02461 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC19.88■□□□□ 0.77
COL3A1P02461 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
COL3A1P02461 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
COL3A1P02461 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.88■□□□□ 0.77
COL3A1P02461 POM121L10P-201ENST00000436994 1285 ntBASIC19.88■□□□□ 0.77
COL3A1P02461 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
COL3A1P02461 AC091804.1-201ENST00000486888 567 ntBASIC19.88■□□□□ 0.77
COL3A1P02461 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
COL3A1P02461 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 BX088702.1-201ENST00000610784 235 ntBASIC19.88■□□□□ 0.77
COL3A1P02461 Z98259.2-201ENST00000641583 609 ntBASIC19.88■□□□□ 0.77
COL3A1P02461 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
COL3A1P02461 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC19.88■□□□□ 0.77
COL3A1P02461 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC19.88■□□□□ 0.77
COL3A1P02461 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 AC006058.4-201ENST00000624016 1670 ntBASIC19.88■□□□□ 0.77
COL3A1P02461 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL3A1P02461 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 AC022494.1-201ENST00000466044 728 ntBASIC19.87■□□□□ 0.77
COL3A1P02461 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
COL3A1P02461 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC19.87■□□□□ 0.77
COL3A1P02461 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC19.87■□□□□ 0.77
COL3A1P02461 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.87■□□□□ 0.77
COL3A1P02461 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
COL3A1P02461 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
COL3A1P02461 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
COL3A1P02461 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
COL3A1P02461 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC19.87■□□□□ 0.77
COL3A1P02461 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.87■□□□□ 0.77
COL3A1P02461 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL3A1P02461 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
COL3A1P02461 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.86■□□□□ 0.77
COL3A1P02461 KLF2P1-201ENST00000447438 1042 ntBASIC19.86■□□□□ 0.77
COL3A1P02461 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC19.86■□□□□ 0.77
COL3A1P02461 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC19.86■□□□□ 0.77
COL3A1P02461 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC19.86■□□□□ 0.77
COL3A1P02461 AL118558.3-201ENST00000607414 1079 ntBASIC19.86■□□□□ 0.77
COL3A1P02461 AL136301.1-201ENST00000615830 422 ntBASIC19.86■□□□□ 0.77
COL3A1P02461 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
COL3A1P02461 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC19.86■□□□□ 0.77
COL3A1P02461 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC19.86■□□□□ 0.77
COL3A1P02461 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC19.86■□□□□ 0.77
COL3A1P02461 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL3A1P02461 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC19.86■□□□□ 0.77
COL3A1P02461 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL3A1P02461 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC19.86■□□□□ 0.77
COL3A1P02461 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL3A1P02461 POR-201ENST00000394893 2532 ntTSL 5 BASIC19.86■□□□□ 0.77
COL3A1P02461 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.86■□□□□ 0.77
COL3A1P02461 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC19.86■□□□□ 0.77
COL3A1P02461 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL3A1P02461 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC19.86■□□□□ 0.77
COL3A1P02461 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC19.86■□□□□ 0.77
COL3A1P02461 AL645933.1-201ENST00000440087 609 ntBASIC19.86■□□□□ 0.77
COL3A1P02461 PUDPP3-201ENST00000445368 636 ntBASIC19.86■□□□□ 0.77
COL3A1P02461 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC19.86■□□□□ 0.77
COL3A1P02461 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.86■□□□□ 0.77
COL3A1P02461 MIR6787-201ENST00000616675 61 ntBASIC19.86■□□□□ 0.77
COL3A1P02461 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms