Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.86■□□□□ 0.45
CDKL5O76039 SERBP1P5-201ENST00000510079 1181 ntBASIC17.86■□□□□ 0.45
CDKL5O76039 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.86■□□□□ 0.45
CDKL5O76039 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.86■□□□□ 0.45
CDKL5O76039 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.86■□□□□ 0.45
CDKL5O76039 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.86■□□□□ 0.45
CDKL5O76039 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.86■□□□□ 0.45
CDKL5O76039 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
CDKL5O76039 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.86■□□□□ 0.45
CDKL5O76039 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
CDKL5O76039 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CDKL5O76039 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.86■□□□□ 0.45
CDKL5O76039 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 AC007787.1-201ENST00000588095 1583 ntBASIC17.86■□□□□ 0.45
CDKL5O76039 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CDKL5O76039 AL138799.1-201ENST00000448213 1675 ntBASIC17.86■□□□□ 0.45
CDKL5O76039 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CDKL5O76039 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.86■□□□□ 0.45
CDKL5O76039 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CDKL5O76039 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CDKL5O76039 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDKL5O76039 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.86■□□□□ 0.45
CDKL5O76039 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.85■□□□□ 0.45
CDKL5O76039 OR2I1P-209ENST00000641730 5365 ntBASIC17.85■□□□□ 0.45
CDKL5O76039 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CDKL5O76039 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
CDKL5O76039 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.85■□□□□ 0.45
CDKL5O76039 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CDKL5O76039 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
CDKL5O76039 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.85■□□□□ 0.45
CDKL5O76039 AL353779.1-201ENST00000434793 351 ntBASIC17.85■□□□□ 0.45
CDKL5O76039 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.85■□□□□ 0.45
CDKL5O76039 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.85■□□□□ 0.45
CDKL5O76039 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.85■□□□□ 0.45
CDKL5O76039 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CDKL5O76039 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.85■□□□□ 0.45
CDKL5O76039 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC17.85■□□□□ 0.45
CDKL5O76039 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.85■□□□□ 0.45
CDKL5O76039 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.85■□□□□ 0.45
CDKL5O76039 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.85■□□□□ 0.45
CDKL5O76039 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.85■□□□□ 0.45
CDKL5O76039 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.85■□□□□ 0.45
CDKL5O76039 AL096865.1-201ENST00000606796 927 ntBASIC17.85■□□□□ 0.45
CDKL5O76039 AC004233.3-201ENST00000607794 1269 ntBASIC17.85■□□□□ 0.45
CDKL5O76039 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.85■□□□□ 0.45
CDKL5O76039 AJ011931.1-201ENST00000618749 2492 ntBASIC17.85■□□□□ 0.45
CDKL5O76039 AC093525.8-201ENST00000624099 1342 ntBASIC17.85■□□□□ 0.45
CDKL5O76039 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC17.85■□□□□ 0.45
CDKL5O76039 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC17.85■□□□□ 0.45
CDKL5O76039 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
CDKL5O76039 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC17.85■□□□□ 0.45
CDKL5O76039 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDKL5O76039 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
CDKL5O76039 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CDKL5O76039 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDKL5O76039 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDKL5O76039 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CDKL5O76039 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDKL5O76039 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDKL5O76039 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDKL5O76039 INTS4P2-202ENST00000614726 2019 ntBASIC17.84■□□□□ 0.45
CDKL5O76039 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDKL5O76039 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CDKL5O76039 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDKL5O76039 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.84■□□□□ 0.45
CDKL5O76039 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDKL5O76039 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms