Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 AC018529.1-201ENST00000613063 361 ntBASIC15.13■□□□□ 0.01
VPS4BO75351 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
VPS4BO75351 AP3S2-216ENST00000617003 1561 ntBASIC15.13■□□□□ 0.01
VPS4BO75351 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
VPS4BO75351 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VPS4BO75351 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VPS4BO75351 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VPS4BO75351 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
VPS4BO75351 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VPS4BO75351 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.13■□□□□ 0.01
VPS4BO75351 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VPS4BO75351 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VPS4BO75351 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
VPS4BO75351 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VPS4BO75351 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4BO75351 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4BO75351 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 SBF1P1-201ENST00000444527 5631 ntBASIC15.12■□□□□ 0.01
VPS4BO75351 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4BO75351 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4BO75351 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 FO393414.2-201ENST00000405153 598 ntBASIC15.12■□□□□ 0.01
VPS4BO75351 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 AL353779.1-201ENST00000434793 351 ntBASIC15.12■□□□□ 0.01
VPS4BO75351 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4BO75351 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4BO75351 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4BO75351 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4BO75351 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
VPS4BO75351 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4BO75351 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4BO75351 AC140912.1-201ENST00000577171 1054 ntBASIC15.12■□□□□ 0.01
VPS4BO75351 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4BO75351 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4BO75351 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.12■□□□□ 0.01
VPS4BO75351 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.12■□□□□ 0.01
VPS4BO75351 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4BO75351 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4BO75351 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.12■□□□□ 0.01
VPS4BO75351 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
VPS4BO75351 AC067750.1-201ENST00000608826 6545 ntBASIC15.12■□□□□ 0.01
VPS4BO75351 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VPS4BO75351 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC15.12■□□□□ 0.01
VPS4BO75351 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VPS4BO75351 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VPS4BO75351 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4BO75351 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.11■□□□□ 0.01
VPS4BO75351 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VPS4BO75351 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
VPS4BO75351 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
VPS4BO75351 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4BO75351 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
VPS4BO75351 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VPS4BO75351 TSSK5P-201ENST00000423978 907 ntBASIC15.11■□□□□ 0.01
VPS4BO75351 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.11■□□□□ 0.01
VPS4BO75351 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms