Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC21.71■■□□□ 1.07
MSH5O43196 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
MSH5O43196 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.07
MSH5O43196 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.07
MSH5O43196 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
MSH5O43196 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC21.7■■□□□ 1.06
MSH5O43196 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC21.7■■□□□ 1.06
MSH5O43196 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 SNCA-202ENST00000345009 1096 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 PDCL3P7-201ENST00000392251 712 ntBASIC21.7■■□□□ 1.06
MSH5O43196 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 AL138880.1-201ENST00000405824 642 ntBASIC21.7■■□□□ 1.06
MSH5O43196 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC21.7■■□□□ 1.06
MSH5O43196 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC21.7■■□□□ 1.06
MSH5O43196 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 NMNAT1P2-201ENST00000435192 860 ntBASIC21.7■■□□□ 1.06
MSH5O43196 AC103409.1-201ENST00000521199 564 ntTSL 5 BASIC21.7■■□□□ 1.06
MSH5O43196 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC21.7■■□□□ 1.06
MSH5O43196 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 AC025171.4-201ENST00000607250 1047 ntBASIC21.7■■□□□ 1.06
MSH5O43196 MIR6799-201ENST00000620297 69 ntBASIC21.7■■□□□ 1.06
MSH5O43196 AL669831.3-208ENST00000634337 891 ntTSL 5 BASIC21.7■■□□□ 1.06
MSH5O43196 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
MSH5O43196 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
MSH5O43196 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH5O43196 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC21.7■■□□□ 1.06
MSH5O43196 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
MSH5O43196 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC21.69■■□□□ 1.06
MSH5O43196 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC21.69■■□□□ 1.06
MSH5O43196 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
MSH5O43196 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
MSH5O43196 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
MSH5O43196 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
MSH5O43196 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 RNU6-867P-201ENST00000364956 107 ntBASIC21.69■■□□□ 1.06
MSH5O43196 HMGA1P7-201ENST00000406908 502 ntBASIC21.69■■□□□ 1.06
MSH5O43196 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC21.69■■□□□ 1.06
MSH5O43196 ZNF736P7Y-201ENST00000425158 820 ntBASIC21.69■■□□□ 1.06
MSH5O43196 PTPA-220ENST00000436883 532 ntTSL 4 BASIC21.69■■□□□ 1.06
MSH5O43196 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 AC117525.1-201ENST00000515228 503 ntBASIC21.69■■□□□ 1.06
MSH5O43196 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC21.69■■□□□ 1.06
MSH5O43196 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 AC107918.2-201ENST00000530817 355 ntBASIC21.69■■□□□ 1.06
MSH5O43196 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC21.69■■□□□ 1.06
MSH5O43196 LINC00566-201ENST00000561557 570 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC21.69■■□□□ 1.06
MSH5O43196 LINC02152-201ENST00000566208 1281 ntBASIC21.69■■□□□ 1.06
MSH5O43196 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC21.69■■□□□ 1.06
MSH5O43196 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 AL121658.1-201ENST00000608489 712 ntBASIC21.69■■□□□ 1.06
MSH5O43196 GNG2-216ENST00000615906 1294 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
MSH5O43196 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC21.69■■□□□ 1.06
MSH5O43196 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 MND1-206ENST00000622785 830 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
MSH5O43196 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 AL445675.1-201ENST00000603868 1410 ntBASIC21.69■■□□□ 1.06
MSH5O43196 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 CALB1-208ENST00000518457 1490 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH5O43196 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH5O43196 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH5O43196 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 AMZ2P2-201ENST00000406819 1057 ntBASIC21.68■■□□□ 1.06
MSH5O43196 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH5O43196 AC073987.1-201ENST00000422683 638 ntTSL 3 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms