Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 CEND1P1-201ENST00000451006 455 ntBASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 PGAM5P1-201ENST00000518923 814 ntBASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 AC018442.1-201ENST00000421439 2061 ntBASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.44■□□□□ 0.06
TRIM49D1C9J1S8 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 ELL2P1-201ENST00000413990 1906 ntBASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 AC093520.2-201ENST00000561830 333 ntBASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 MTDHP5-201ENST00000598980 586 ntBASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 AC007967.4-201ENST00000614700 386 ntBASIC15.43■□□□□ 0.06
TRIM49D1C9J1S8 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms