Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 AC130709.1-201ENST00000484779 1212 ntBASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 NAT9-220ENST00000582870 896 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 AC005632.3-201ENST00000605544 308 ntBASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 MIR6858-201ENST00000620733 67 ntBASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM43Q96BQ3 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 AC127383.1-201ENST00000444697 1800 ntBASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 SOD2-202ENST00000367054 815 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 AL592076.1-201ENST00000424448 303 ntBASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 AC010234.1-201ENST00000494599 870 ntBASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 TPM1-223ENST00000560445 485 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 AL157813.1-201ENST00000612996 587 ntBASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 MIR6769A-201ENST00000617340 73 ntBASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM43Q96BQ3 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 AL132780.4-201ENST00000624870 1135 ntBASIC16.4■□□□□ 0.22
TRIM43Q96BQ3 AC011270.2-201ENST00000624293 2550 ntBASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms