Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 AC093520.2-201ENST00000561830 333 ntBASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 RAB34-224ENST00000636513 888 ntTSL 5 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 AL589739.1-201ENST00000607720 493 ntBASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 GPER1-207ENST00000619052 571 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC54Q8NEL0 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CCDC54Q8NEL0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms