Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC19.85■□□□□ 0.77
USP54Q70EL1 CTBP2P4-201ENST00000513884 920 ntBASIC19.85■□□□□ 0.77
USP54Q70EL1 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 NEU3-205ENST00000531619 582 ntTSL 5 BASIC19.85■□□□□ 0.77
USP54Q70EL1 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC19.85■□□□□ 0.77
USP54Q70EL1 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC19.85■□□□□ 0.77
USP54Q70EL1 WDR7-208ENST00000589935 544 ntTSL 4 BASIC19.85■□□□□ 0.77
USP54Q70EL1 RN7SL736P-201ENST00000613111 269 ntBASIC19.85■□□□□ 0.77
USP54Q70EL1 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
USP54Q70EL1 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.85■□□□□ 0.77
USP54Q70EL1 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC19.85■□□□□ 0.77
USP54Q70EL1 LINC01101-201ENST00000622953 1884 ntBASIC19.85■□□□□ 0.77
USP54Q70EL1 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.84■□□□□ 0.77
USP54Q70EL1 JTB-202ENST00000356648 1040 ntTSL 2 BASIC19.84■□□□□ 0.77
USP54Q70EL1 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC19.84■□□□□ 0.77
USP54Q70EL1 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC19.84■□□□□ 0.77
USP54Q70EL1 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC19.84■□□□□ 0.77
USP54Q70EL1 AP000358.1-201ENST00000456260 156 ntBASIC19.84■□□□□ 0.77
USP54Q70EL1 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC19.84■□□□□ 0.77
USP54Q70EL1 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC19.84■□□□□ 0.77
USP54Q70EL1 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC19.84■□□□□ 0.77
USP54Q70EL1 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
USP54Q70EL1 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 FAM90A2P-201ENST00000511144 1395 ntBASIC19.84■□□□□ 0.77
USP54Q70EL1 FAM90A25P-201ENST00000528404 1395 ntBASIC19.84■□□□□ 0.77
USP54Q70EL1 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.84■□□□□ 0.77
USP54Q70EL1 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC19.84■□□□□ 0.77
USP54Q70EL1 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC19.84■□□□□ 0.77
USP54Q70EL1 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 DUTP3-201ENST00000450025 415 ntBASIC19.84■□□□□ 0.77
USP54Q70EL1 FTH1P22-201ENST00000456305 520 ntBASIC19.84■□□□□ 0.77
USP54Q70EL1 ORAOV1P1-201ENST00000503108 395 ntBASIC19.84■□□□□ 0.77
USP54Q70EL1 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC19.84■□□□□ 0.77
USP54Q70EL1 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC19.84■□□□□ 0.77
USP54Q70EL1 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC19.84■□□□□ 0.77
USP54Q70EL1 AC003686.1-201ENST00000550956 1034 ntBASIC19.84■□□□□ 0.77
USP54Q70EL1 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
USP54Q70EL1 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USP54Q70EL1 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC19.84■□□□□ 0.77
USP54Q70EL1 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC19.84■□□□□ 0.77
USP54Q70EL1 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC19.84■□□□□ 0.77
USP54Q70EL1 AC007718.1-201ENST00000621078 280 ntBASIC19.84■□□□□ 0.77
USP54Q70EL1 AL805961.1-201ENST00000642026 753 ntBASIC19.84■□□□□ 0.77
USP54Q70EL1 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.77
USP54Q70EL1 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP54Q70EL1 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USP54Q70EL1 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP54Q70EL1 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC19.83■□□□□ 0.77
USP54Q70EL1 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USP54Q70EL1 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
USP54Q70EL1 AC015909.3-201ENST00000572855 1794 ntBASIC19.83■□□□□ 0.77
USP54Q70EL1 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
USP54Q70EL1 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC19.83■□□□□ 0.77
USP54Q70EL1 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USP54Q70EL1 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.83■□□□□ 0.76
USP54Q70EL1 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP54Q70EL1 TSPY25P-201ENST00000429463 745 ntBASIC19.83■□□□□ 0.76
USP54Q70EL1 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USP54Q70EL1 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC19.83■□□□□ 0.76
USP54Q70EL1 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP54Q70EL1 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC19.83■□□□□ 0.76
USP54Q70EL1 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.76
USP54Q70EL1 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
USP54Q70EL1 AC103691.2-201ENST00000618824 433 ntBASIC19.83■□□□□ 0.76
USP54Q70EL1 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USP54Q70EL1 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC19.83■□□□□ 0.76
USP54Q70EL1 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC19.83■□□□□ 0.76
USP54Q70EL1 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP54Q70EL1 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP54Q70EL1 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP54Q70EL1 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP54Q70EL1 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USP54Q70EL1 SSR4P1-203ENST00000599569 2260 ntBASIC19.82■□□□□ 0.76
USP54Q70EL1 PCDHA1-201ENST00000378133 2726 ntBASIC19.82■□□□□ 0.76
USP54Q70EL1 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
USP54Q70EL1 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.82■□□□□ 0.76
USP54Q70EL1 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.82■□□□□ 0.76
USP54Q70EL1 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms