Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTR9Q6PD62 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
CTR9Q6PD62 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 AL138709.1-201ENST00000614840 1693 ntBASIC18.23■□□□□ 0.51
CTR9Q6PD62 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 AL645937.2-201ENST00000396808 931 ntBASIC18.23■□□□□ 0.51
CTR9Q6PD62 AC016694.1-201ENST00000434179 700 ntBASIC18.23■□□□□ 0.51
CTR9Q6PD62 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 KRT18P25-201ENST00000508931 1278 ntBASIC18.23■□□□□ 0.51
CTR9Q6PD62 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
CTR9Q6PD62 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTR9Q6PD62 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 ACTBP8-201ENST00000403258 1108 ntBASIC18.22■□□□□ 0.51
CTR9Q6PD62 AL139094.1-201ENST00000405549 1188 ntBASIC18.22■□□□□ 0.51
CTR9Q6PD62 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 RPL7P3-201ENST00000441388 714 ntBASIC18.22■□□□□ 0.51
CTR9Q6PD62 KLF2P4-201ENST00000451959 1225 ntBASIC18.22■□□□□ 0.51
CTR9Q6PD62 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 AP000812.2-201ENST00000538934 718 ntBASIC18.22■□□□□ 0.51
CTR9Q6PD62 AP005482.1-201ENST00000563722 1273 ntBASIC18.22■□□□□ 0.51
CTR9Q6PD62 AC025279.2-201ENST00000569730 653 ntBASIC18.22■□□□□ 0.51
CTR9Q6PD62 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTR9Q6PD62 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.22■□□□□ 0.51
CTR9Q6PD62 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTR9Q6PD62 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTR9Q6PD62 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.21■□□□□ 0.51
CTR9Q6PD62 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.21■□□□□ 0.51
CTR9Q6PD62 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTR9Q6PD62 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
CTR9Q6PD62 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTR9Q6PD62 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CTR9Q6PD62 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CTR9Q6PD62 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms