Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDH1Q08174 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PCDH1Q08174 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.86□□□□□ -0.03
PCDH1Q08174 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.86□□□□□ -0.03
PCDH1Q08174 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.86□□□□□ -0.03
PCDH1Q08174 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.86□□□□□ -0.03
PCDH1Q08174 AC004790.1-201ENST00000612686 536 ntBASIC14.86□□□□□ -0.03
PCDH1Q08174 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.86□□□□□ -0.03
PCDH1Q08174 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.86□□□□□ -0.03
PCDH1Q08174 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.86□□□□□ -0.03
PCDH1Q08174 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDH1Q08174 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
PCDH1Q08174 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDH1Q08174 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDH1Q08174 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PCDH1Q08174 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PCDH1Q08174 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PCDH1Q08174 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDH1Q08174 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCDH1Q08174 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PCDH1Q08174 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDH1Q08174 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDH1Q08174 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
PCDH1Q08174 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDH1Q08174 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDH1Q08174 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDH1Q08174 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDH1Q08174 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCDH1Q08174 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.86□□□□□ -0.03
PCDH1Q08174 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.86□□□□□ -0.03
PCDH1Q08174 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PCDH1Q08174 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDH1Q08174 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
PCDH1Q08174 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDH1Q08174 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.85□□□□□ -0.03
PCDH1Q08174 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDH1Q08174 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDH1Q08174 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDH1Q08174 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 AL645937.2-201ENST00000396808 931 ntBASIC14.85□□□□□ -0.03
PCDH1Q08174 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDH1Q08174 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.85□□□□□ -0.03
PCDH1Q08174 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.85□□□□□ -0.03
PCDH1Q08174 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 AL512638.1-201ENST00000457493 794 ntBASIC14.85□□□□□ -0.03
PCDH1Q08174 RN7SL399P-201ENST00000471648 279 ntBASIC14.85□□□□□ -0.03
PCDH1Q08174 RNA5SP421-201ENST00000516864 134 ntBASIC14.85□□□□□ -0.03
PCDH1Q08174 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.85□□□□□ -0.03
PCDH1Q08174 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDH1Q08174 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDH1Q08174 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.85□□□□□ -0.03
PCDH1Q08174 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDH1Q08174 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDH1Q08174 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PCDH1Q08174 AL662799.1-202ENST00000614205 422 ntBASIC14.85□□□□□ -0.03
PCDH1Q08174 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.85□□□□□ -0.03
PCDH1Q08174 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
PCDH1Q08174 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 AC093525.8-201ENST00000624099 1342 ntBASIC14.85□□□□□ -0.03
PCDH1Q08174 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDH1Q08174 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
PCDH1Q08174 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDH1Q08174 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.85□□□□□ -0.03
PCDH1Q08174 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCDH1Q08174 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
PCDH1Q08174 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDH1Q08174 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDH1Q08174 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDH1Q08174 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDH1Q08174 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDH1Q08174 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.84□□□□□ -0.03
PCDH1Q08174 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDH1Q08174 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDH1Q08174 LINC00528-201ENST00000600723 2160 ntBASIC14.84□□□□□ -0.03
PCDH1Q08174 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PCDH1Q08174 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
PCDH1Q08174 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms