Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
CX3CL1P78423 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CX3CL1P78423 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CX3CL1P78423 AC007191.1-201ENST00000623179 2995 ntBASIC12.47□□□□□ -0.41
CX3CL1P78423 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CX3CL1P78423 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC12.47□□□□□ -0.41
CX3CL1P78423 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
CX3CL1P78423 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
CX3CL1P78423 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
CX3CL1P78423 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC12.47□□□□□ -0.41
CX3CL1P78423 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC12.46□□□□□ -0.41
CX3CL1P78423 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC12.46□□□□□ -0.41
CX3CL1P78423 BTBD7P1-201ENST00000447253 1453 ntBASIC12.46□□□□□ -0.41
CX3CL1P78423 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC12.46□□□□□ -0.41
CX3CL1P78423 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC12.46□□□□□ -0.41
CX3CL1P78423 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC12.46□□□□□ -0.41
CX3CL1P78423 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
CX3CL1P78423 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC12.46□□□□□ -0.41
CX3CL1P78423 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC12.46□□□□□ -0.41
CX3CL1P78423 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
CX3CL1P78423 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.46□□□□□ -0.41
CX3CL1P78423 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.46□□□□□ -0.41
CX3CL1P78423 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
CX3CL1P78423 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
CX3CL1P78423 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC12.46□□□□□ -0.41
CX3CL1P78423 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC12.46□□□□□ -0.41
CX3CL1P78423 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC12.46□□□□□ -0.41
CX3CL1P78423 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC12.46□□□□□ -0.41
CX3CL1P78423 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC12.46□□□□□ -0.41
CX3CL1P78423 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC12.46□□□□□ -0.41
CX3CL1P78423 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC12.46□□□□□ -0.41
CX3CL1P78423 RPL13P2-201ENST00000440687 659 ntBASIC12.46□□□□□ -0.41
CX3CL1P78423 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC12.46□□□□□ -0.41
CX3CL1P78423 RNA5SP421-201ENST00000516864 134 ntBASIC12.46□□□□□ -0.41
CX3CL1P78423 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.46□□□□□ -0.41
CX3CL1P78423 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
CX3CL1P78423 TIMM17BP1-201ENST00000545713 516 ntBASIC12.46□□□□□ -0.41
CX3CL1P78423 AC009407.1-201ENST00000568958 598 ntBASIC12.46□□□□□ -0.41
CX3CL1P78423 LINC01115-203ENST00000606068 577 ntBASIC12.46□□□□□ -0.41
CX3CL1P78423 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC12.46□□□□□ -0.41
CX3CL1P78423 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC12.46□□□□□ -0.41
CX3CL1P78423 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC12.46□□□□□ -0.41
CX3CL1P78423 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.46□□□□□ -0.41
CX3CL1P78423 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CX3CL1P78423 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CL1P78423 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
CX3CL1P78423 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC12.46□□□□□ -0.42
CX3CL1P78423 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CL1P78423 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
CX3CL1P78423 AC022144.1-201ENST00000602255 1580 ntBASIC12.46□□□□□ -0.42
CX3CL1P78423 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CL1P78423 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC12.46□□□□□ -0.42
CX3CL1P78423 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC12.46□□□□□ -0.42
CX3CL1P78423 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC12.46□□□□□ -0.42
CX3CL1P78423 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.46□□□□□ -0.42
CX3CL1P78423 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CL1P78423 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CL1P78423 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.46□□□□□ -0.42
CX3CL1P78423 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.46□□□□□ -0.42
CX3CL1P78423 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CL1P78423 AC139749.1-202ENST00000617529 3139 ntBASIC12.46□□□□□ -0.42
CX3CL1P78423 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CL1P78423 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CL1P78423 CICP23-201ENST00000605013 2741 ntBASIC12.46□□□□□ -0.42
CX3CL1P78423 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CX3CL1P78423 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.45□□□□□ -0.42
CX3CL1P78423 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CX3CL1P78423 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CX3CL1P78423 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.45□□□□□ -0.42
CX3CL1P78423 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
CX3CL1P78423 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms