Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDH11P55287 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDH11P55287 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.18□□□□□ -0.14
CDH11P55287 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.18□□□□□ -0.14
CDH11P55287 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDH11P55287 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDH11P55287 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDH11P55287 ST20-AS1-201ENST00000560255 4223 ntBASIC14.18□□□□□ -0.14
CDH11P55287 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDH11P55287 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDH11P55287 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDH11P55287 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CDH11P55287 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CDH11P55287 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CDH11P55287 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 AC139749.1-202ENST00000617529 3139 ntBASIC14.17□□□□□ -0.14
CDH11P55287 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
CDH11P55287 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CDH11P55287 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.17□□□□□ -0.14
CDH11P55287 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CDH11P55287 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
CDH11P55287 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.17□□□□□ -0.14
CDH11P55287 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.17□□□□□ -0.14
CDH11P55287 AL353705.2-201ENST00000428243 662 ntBASIC14.17□□□□□ -0.14
CDH11P55287 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.17□□□□□ -0.14
CDH11P55287 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.17□□□□□ -0.14
CDH11P55287 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.17□□□□□ -0.14
CDH11P55287 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.17□□□□□ -0.14
CDH11P55287 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CDH11P55287 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.17□□□□□ -0.14
CDH11P55287 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 AL136982.4-201ENST00000437689 1740 ntBASIC14.17□□□□□ -0.14
CDH11P55287 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
CDH11P55287 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.17□□□□□ -0.14
CDH11P55287 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.17□□□□□ -0.14
CDH11P55287 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CDH11P55287 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH11P55287 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
CDH11P55287 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CDH11P55287 AC005912.2-201ENST00000619492 2400 ntBASIC14.16□□□□□ -0.14
CDH11P55287 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 KRT8P37-201ENST00000451609 1420 ntBASIC14.16□□□□□ -0.14
CDH11P55287 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.16□□□□□ -0.14
CDH11P55287 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH11P55287 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CDH11P55287 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CDH11P55287 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CDH11P55287 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.16□□□□□ -0.14
CDH11P55287 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CDH11P55287 AL035633.1-201ENST00000406139 838 ntBASIC14.16□□□□□ -0.14
CDH11P55287 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CDH11P55287 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.16□□□□□ -0.14
CDH11P55287 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.16□□□□□ -0.14
CDH11P55287 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.16□□□□□ -0.14
CDH11P55287 PHKG1P2-201ENST00000457537 863 ntBASIC14.16□□□□□ -0.14
CDH11P55287 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.16□□□□□ -0.14
CDH11P55287 RNA5SP410-201ENST00000516285 106 ntBASIC14.16□□□□□ -0.14
CDH11P55287 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.16□□□□□ -0.14
CDH11P55287 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.16□□□□□ -0.14
CDH11P55287 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH11P55287 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.16□□□□□ -0.14
CDH11P55287 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.16□□□□□ -0.14
CDH11P55287 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.16□□□□□ -0.14
CDH11P55287 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.16□□□□□ -0.14
CDH11P55287 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
CDH11P55287 AC007967.4-201ENST00000614700 386 ntBASIC14.16□□□□□ -0.14
CDH11P55287 AC073592.8-201ENST00000624126 511 ntBASIC14.16□□□□□ -0.14
CDH11P55287 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.16□□□□□ -0.14
CDH11P55287 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CDH11P55287 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CDH11P55287 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CDH11P55287 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms