Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
NKX2-1P43699 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC12.66□□□□□ -0.38
NKX2-1P43699 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
NKX2-1P43699 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.66□□□□□ -0.38
NKX2-1P43699 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.66□□□□□ -0.38
NKX2-1P43699 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC12.66□□□□□ -0.38
NKX2-1P43699 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
NKX2-1P43699 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 RHOQP3-201ENST00000437982 621 ntBASIC12.66□□□□□ -0.38
NKX2-1P43699 ELP6-209ENST00000446787 894 ntTSL 3 BASIC12.66□□□□□ -0.38
NKX2-1P43699 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC12.66□□□□□ -0.38
NKX2-1P43699 KRT126P-201ENST00000549467 1181 ntBASIC12.66□□□□□ -0.38
NKX2-1P43699 HNRNPUP1-201ENST00000554987 333 ntBASIC12.66□□□□□ -0.38
NKX2-1P43699 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC12.66□□□□□ -0.38
NKX2-1P43699 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC12.66□□□□□ -0.38
NKX2-1P43699 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 RN7SL510P-201ENST00000581311 263 ntBASIC12.66□□□□□ -0.38
NKX2-1P43699 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 AC073389.1-201ENST00000595595 795 ntBASIC12.66□□□□□ -0.38
NKX2-1P43699 AC097359.3-201ENST00000603982 1210 ntBASIC12.66□□□□□ -0.38
NKX2-1P43699 AC010507.1-201ENST00000633895 436 ntBASIC12.66□□□□□ -0.38
NKX2-1P43699 VPS51-217ENST00000639871 243 ntTSL 5 BASIC12.66□□□□□ -0.38
NKX2-1P43699 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.66□□□□□ -0.38
NKX2-1P43699 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 FUK-202ENST00000378912 3925 ntTSL 2 BASIC12.66□□□□□ -0.38
NKX2-1P43699 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC12.66□□□□□ -0.38
NKX2-1P43699 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC12.66□□□□□ -0.38
NKX2-1P43699 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
NKX2-1P43699 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC12.66□□□□□ -0.38
NKX2-1P43699 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC12.66□□□□□ -0.38
NKX2-1P43699 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC12.66□□□□□ -0.38
NKX2-1P43699 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
NKX2-1P43699 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.65□□□□□ -0.38
NKX2-1P43699 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 AL359881.3-201ENST00000602640 1721 ntBASIC12.65□□□□□ -0.38
NKX2-1P43699 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 CYP4F24P-201ENST00000586049 1580 ntBASIC12.65□□□□□ -0.38
NKX2-1P43699 SLC9A7P1-202ENST00000556476 2239 ntBASIC12.65□□□□□ -0.38
NKX2-1P43699 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
NKX2-1P43699 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
NKX2-1P43699 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC12.65□□□□□ -0.38
NKX2-1P43699 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 AC018529.2-202ENST00000611482 3087 ntBASIC12.65□□□□□ -0.38
NKX2-1P43699 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
NKX2-1P43699 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC12.65□□□□□ -0.38
NKX2-1P43699 EEF1DP4-201ENST00000446006 880 ntBASIC12.65□□□□□ -0.38
NKX2-1P43699 AC018712.1-201ENST00000455767 687 ntBASIC12.65□□□□□ -0.38
NKX2-1P43699 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC12.65□□□□□ -0.38
NKX2-1P43699 PP7080-204ENST00000510714 601 ntTSL 3 BASIC12.65□□□□□ -0.38
NKX2-1P43699 AC105233.2-201ENST00000523697 349 ntBASIC12.65□□□□□ -0.38
NKX2-1P43699 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 AF228730.5-201ENST00000530288 346 ntBASIC12.65□□□□□ -0.38
NKX2-1P43699 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 IRF5-214ENST00000613821 595 ntTSL 5 BASIC12.65□□□□□ -0.38
NKX2-1P43699 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.65□□□□□ -0.38
NKX2-1P43699 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC12.65□□□□□ -0.38
NKX2-1P43699 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
NKX2-1P43699 AMT-224ENST00000635808 1610 ntTSL 5 BASIC12.65□□□□□ -0.38
NKX2-1P43699 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms