Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC18.07■□□□□ 0.48
BRCA1P38398 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC18.07■□□□□ 0.48
BRCA1P38398 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
BRCA1P38398 SRP14-204ENST00000558720 780 ntTSL 2 BASIC18.07■□□□□ 0.48
BRCA1P38398 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC18.07■□□□□ 0.48
BRCA1P38398 AL627230.2-201ENST00000613254 655 ntBASIC18.07■□□□□ 0.48
BRCA1P38398 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC18.07■□□□□ 0.48
BRCA1P38398 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
BRCA1P38398 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BRCA1P38398 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BRCA1P38398 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BRCA1P38398 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
BRCA1P38398 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BRCA1P38398 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BRCA1P38398 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.06■□□□□ 0.48
BRCA1P38398 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC18.06■□□□□ 0.48
BRCA1P38398 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC18.06■□□□□ 0.48
BRCA1P38398 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC18.06■□□□□ 0.48
BRCA1P38398 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
BRCA1P38398 ST13P19-201ENST00000442505 1124 ntBASIC18.06■□□□□ 0.48
BRCA1P38398 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC18.06■□□□□ 0.48
BRCA1P38398 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC18.06■□□□□ 0.48
BRCA1P38398 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC18.06■□□□□ 0.48
BRCA1P38398 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC18.06■□□□□ 0.48
BRCA1P38398 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC18.06■□□□□ 0.48
BRCA1P38398 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC18.06■□□□□ 0.48
BRCA1P38398 AC068867.1-201ENST00000559855 150 ntBASIC18.06■□□□□ 0.48
BRCA1P38398 AP005264.6-204ENST00000588436 719 ntBASIC18.06■□□□□ 0.48
BRCA1P38398 AL118522.1-201ENST00000611368 560 ntBASIC18.06■□□□□ 0.48
BRCA1P38398 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BRCA1P38398 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BRCA1P38398 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
BRCA1P38398 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.06■□□□□ 0.48
BRCA1P38398 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BRCA1P38398 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BRCA1P38398 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC18.05■□□□□ 0.48
BRCA1P38398 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 CELP-201ENST00000411440 1249 ntTSL 5 BASIC18.05■□□□□ 0.48
BRCA1P38398 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 CD164-210ENST00000512821 964 ntTSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC18.05■□□□□ 0.48
BRCA1P38398 TRMT112P3-201ENST00000580149 358 ntBASIC18.05■□□□□ 0.48
BRCA1P38398 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC18.05■□□□□ 0.48
BRCA1P38398 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 AC007292.2-201ENST00000593524 1812 ntBASIC18.05■□□□□ 0.48
BRCA1P38398 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
BRCA1P38398 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.05■□□□□ 0.48
BRCA1P38398 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 AC013726.1-201ENST00000563747 2285 ntBASIC18.05■□□□□ 0.48
BRCA1P38398 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 AC106827.1-201ENST00000366454 431 ntBASIC18.05■□□□□ 0.48
BRCA1P38398 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
BRCA1P38398 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
BRCA1P38398 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 RBM4-207ENST00000506523 654 ntTSL 3 BASIC18.05■□□□□ 0.48
BRCA1P38398 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
BRCA1P38398 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BRCA1P38398 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.04■□□□□ 0.48
BRCA1P38398 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18.04■□□□□ 0.48
BRCA1P38398 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 JTB-202ENST00000356648 1040 ntTSL 2 BASIC18.04■□□□□ 0.48
BRCA1P38398 MIR645-201ENST00000385283 94 ntBASIC18.04■□□□□ 0.48
BRCA1P38398 NME4-203ENST00000397722 1232 ntTSL 2 BASIC18.04■□□□□ 0.48
BRCA1P38398 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BRCA1P38398 CISD2-202ENST00000503643 808 ntTSL 2 BASIC18.04■□□□□ 0.48
BRCA1P38398 KRT8P1-201ENST00000557533 1207 ntBASIC18.04■□□□□ 0.48
BRCA1P38398 ENPP7P8-202ENST00000527856 1345 ntBASIC18.04■□□□□ 0.48
BRCA1P38398 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.04■□□□□ 0.48
BRCA1P38398 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms