Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 AC092135.3-201ENST00000624151 1846 ntBASIC14.74□□□□□ -0.05
MSX2P35548 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC14.74□□□□□ -0.05
MSX2P35548 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.74□□□□□ -0.05
MSX2P35548 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.74□□□□□ -0.05
MSX2P35548 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
MSX2P35548 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.73□□□□□ -0.05
MSX2P35548 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC14.73□□□□□ -0.05
MSX2P35548 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 RPL5P21-201ENST00000404620 815 ntBASIC14.73□□□□□ -0.05
MSX2P35548 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC14.73□□□□□ -0.05
MSX2P35548 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 AC105233.2-201ENST00000523697 349 ntBASIC14.73□□□□□ -0.05
MSX2P35548 AF228730.5-201ENST00000530288 346 ntBASIC14.73□□□□□ -0.05
MSX2P35548 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 AL121912.1-201ENST00000603683 238 ntBASIC14.73□□□□□ -0.05
MSX2P35548 MIR7706-201ENST00000613747 67 ntBASIC14.73□□□□□ -0.05
MSX2P35548 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.73□□□□□ -0.05
MSX2P35548 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
MSX2P35548 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
MSX2P35548 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
MSX2P35548 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.73□□□□□ -0.05
MSX2P35548 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.73□□□□□ -0.05
MSX2P35548 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
MSX2P35548 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.73□□□□□ -0.05
MSX2P35548 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms