Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 AL157407.1-201ENST00000435784 904 ntBASIC14.41□□□□□ -0.1
COL5A1P20908 AC012441.2-201ENST00000444843 739 ntBASIC14.41□□□□□ -0.1
COL5A1P20908 PUDPP3-201ENST00000445368 636 ntBASIC14.41□□□□□ -0.1
COL5A1P20908 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.41□□□□□ -0.1
COL5A1P20908 RN7SL258P-201ENST00000478664 300 ntBASIC14.41□□□□□ -0.1
COL5A1P20908 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.41□□□□□ -0.1
COL5A1P20908 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
COL5A1P20908 NEU3-205ENST00000531619 582 ntTSL 5 BASIC14.41□□□□□ -0.1
COL5A1P20908 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.41□□□□□ -0.1
COL5A1P20908 MIR3677-201ENST00000578964 60 ntBASIC14.41□□□□□ -0.1
COL5A1P20908 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.41□□□□□ -0.1
COL5A1P20908 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.41□□□□□ -0.1
COL5A1P20908 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.41□□□□□ -0.1
COL5A1P20908 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
COL5A1P20908 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC14.41□□□□□ -0.1
COL5A1P20908 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
COL5A1P20908 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC14.41□□□□□ -0.1
COL5A1P20908 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL5A1P20908 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL5A1P20908 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.4□□□□□ -0.1
COL5A1P20908 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.4□□□□□ -0.1
COL5A1P20908 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.4□□□□□ -0.1
COL5A1P20908 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.4□□□□□ -0.1
COL5A1P20908 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL5A1P20908 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL5A1P20908 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.4□□□□□ -0.1
COL5A1P20908 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC14.4□□□□□ -0.1
COL5A1P20908 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC14.4□□□□□ -0.1
COL5A1P20908 KLF2P1-201ENST00000447438 1042 ntBASIC14.4□□□□□ -0.1
COL5A1P20908 CFL1-206ENST00000527344 962 ntTSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC14.4□□□□□ -0.1
COL5A1P20908 WDR7-208ENST00000589935 544 ntTSL 4 BASIC14.4□□□□□ -0.1
COL5A1P20908 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.4□□□□□ -0.1
COL5A1P20908 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL5A1P20908 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL5A1P20908 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
COL5A1P20908 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC14.39□□□□□ -0.11
COL5A1P20908 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC14.39□□□□□ -0.11
COL5A1P20908 AC078991.1-201ENST00000437297 610 ntBASIC14.39□□□□□ -0.11
COL5A1P20908 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC14.39□□□□□ -0.11
COL5A1P20908 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.39□□□□□ -0.11
COL5A1P20908 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC14.39□□□□□ -0.11
COL5A1P20908 AC026803.1-201ENST00000569130 274 ntBASIC14.39□□□□□ -0.11
COL5A1P20908 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
COL5A1P20908 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
COL5A1P20908 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL5A1P20908 CAP2P1-201ENST00000557743 1390 ntBASIC14.39□□□□□ -0.11
COL5A1P20908 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms