Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC15.66■□□□□ 0.1
COL9A1P20849 POM121L8P-201ENST00000417732 1281 ntBASIC15.66■□□□□ 0.1
COL9A1P20849 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC15.66■□□□□ 0.1
COL9A1P20849 ZNF736P11Y-201ENST00000442535 1213 ntBASIC15.66■□□□□ 0.1
COL9A1P20849 ZNF736P12Y-201ENST00000443152 1243 ntBASIC15.66■□□□□ 0.1
COL9A1P20849 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.66■□□□□ 0.1
COL9A1P20849 ZNF736P4Y-201ENST00000454995 1243 ntBASIC15.66■□□□□ 0.1
COL9A1P20849 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC15.66■□□□□ 0.1
COL9A1P20849 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC15.66■□□□□ 0.1
COL9A1P20849 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC15.66■□□□□ 0.1
COL9A1P20849 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC15.66■□□□□ 0.1
COL9A1P20849 TPM1-223ENST00000560445 485 ntTSL 3 BASIC15.66■□□□□ 0.1
COL9A1P20849 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC15.66■□□□□ 0.1
COL9A1P20849 RPL17P45-201ENST00000586289 509 ntBASIC15.66■□□□□ 0.1
COL9A1P20849 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.66■□□□□ 0.1
COL9A1P20849 AC008750.5-201ENST00000595500 473 ntTSL 2 BASIC15.66■□□□□ 0.1
COL9A1P20849 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 Metazoa_SRP.91-201ENST00000622745 281 ntBASIC15.66■□□□□ 0.1
COL9A1P20849 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL9A1P20849 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
COL9A1P20849 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.66■□□□□ 0.1
COL9A1P20849 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 AC124067.4-201ENST00000519691 2379 ntBASIC15.65■□□□□ 0.1
COL9A1P20849 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.65■□□□□ 0.1
COL9A1P20849 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC15.65■□□□□ 0.1
COL9A1P20849 AC026616.1-201ENST00000523157 525 ntBASIC15.65■□□□□ 0.1
COL9A1P20849 AP003171.2-201ENST00000528208 925 ntBASIC15.65■□□□□ 0.1
COL9A1P20849 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC15.65■□□□□ 0.1
COL9A1P20849 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 TP53-221ENST00000615910 1149 ntTSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 AC007718.1-201ENST00000621078 280 ntBASIC15.65■□□□□ 0.1
COL9A1P20849 AC004923.1-202ENST00000642106 209 ntBASIC15.65■□□□□ 0.1
COL9A1P20849 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 PCDH8P1-201ENST00000428983 2773 ntBASIC15.65■□□□□ 0.1
COL9A1P20849 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 AC069224.1-201ENST00000566372 1715 ntBASIC15.65■□□□□ 0.1
COL9A1P20849 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL9A1P20849 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.65■□□□□ 0.1
COL9A1P20849 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
COL9A1P20849 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
COL9A1P20849 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.64■□□□□ 0.09
COL9A1P20849 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL9A1P20849 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
COL9A1P20849 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL9A1P20849 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.64■□□□□ 0.09
COL9A1P20849 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL9A1P20849 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL9A1P20849 NHP2P1-201ENST00000335274 462 ntBASIC15.64■□□□□ 0.09
COL9A1P20849 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.64■□□□□ 0.09
COL9A1P20849 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL9A1P20849 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC15.64■□□□□ 0.09
COL9A1P20849 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.64■□□□□ 0.09
COL9A1P20849 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.64■□□□□ 0.09
COL9A1P20849 HIST2H2BB-201ENST00000449108 381 ntBASIC15.64■□□□□ 0.09
COL9A1P20849 AC073150.1-201ENST00000450406 1084 ntBASIC15.64■□□□□ 0.09
COL9A1P20849 AC244197.1-201ENST00000456494 951 ntBASIC15.64■□□□□ 0.09
COL9A1P20849 KATNBL1P4-201ENST00000503545 918 ntBASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms