Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 AC134915.1-201ENST00000426461 574 ntBASIC17.73■□□□□ 0.43
CTDNEP1O95476 ELK1P1-201ENST00000485699 580 ntBASIC17.73■□□□□ 0.43
CTDNEP1O95476 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 CTBP2P3-201ENST00000585629 1255 ntBASIC17.73■□□□□ 0.43
CTDNEP1O95476 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CTDNEP1O95476 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CTDNEP1O95476 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 AL009178.2-201ENST00000597278 2719 ntBASIC17.72■□□□□ 0.43
CTDNEP1O95476 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 SNX18-202ENST00000343017 3140 ntBASIC17.72■□□□□ 0.43
CTDNEP1O95476 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 AL442647.2-201ENST00000429864 857 ntBASIC17.72■□□□□ 0.43
CTDNEP1O95476 FAM207CP-201ENST00000443486 507 ntBASIC17.72■□□□□ 0.43
CTDNEP1O95476 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.72■□□□□ 0.43
CTDNEP1O95476 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CTDNEP1O95476 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.71■□□□□ 0.43
CTDNEP1O95476 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 AC097359.2-201ENST00000604992 2389 ntBASIC17.71■□□□□ 0.43
CTDNEP1O95476 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 AL645937.2-201ENST00000396808 931 ntBASIC17.71■□□□□ 0.43
CTDNEP1O95476 C1QBPP1-201ENST00000400117 770 ntBASIC17.71■□□□□ 0.43
CTDNEP1O95476 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 WASH4P-201ENST00000564273 1246 ntBASIC17.71■□□□□ 0.43
CTDNEP1O95476 TMEM261P1-201ENST00000604899 340 ntBASIC17.71■□□□□ 0.43
CTDNEP1O95476 AL355385.1-201ENST00000606123 409 ntBASIC17.71■□□□□ 0.43
CTDNEP1O95476 AC007431.3-201ENST00000623221 587 ntBASIC17.71■□□□□ 0.43
CTDNEP1O95476 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTDNEP1O95476 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CTDNEP1O95476 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms