Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHOX2O60902 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC15.4■□□□□ 0.06
SHOX2O60902 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.4■□□□□ 0.06
SHOX2O60902 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 AC020910.6-201ENST00000623084 1459 ntBASIC15.4■□□□□ 0.06
SHOX2O60902 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC15.4■□□□□ 0.06
SHOX2O60902 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.4■□□□□ 0.06
SHOX2O60902 AC136604.1-201ENST00000418535 575 ntBASIC15.4■□□□□ 0.06
SHOX2O60902 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.4■□□□□ 0.06
SHOX2O60902 AL445228.2-201ENST00000605589 952 ntBASIC15.4■□□□□ 0.06
SHOX2O60902 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.4■□□□□ 0.06
SHOX2O60902 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.4■□□□□ 0.06
SHOX2O60902 AGGF1P1-201ENST00000509500 2073 ntBASIC15.4■□□□□ 0.06
SHOX2O60902 AP002761.4-201ENST00000565433 3361 ntBASIC15.4■□□□□ 0.06
SHOX2O60902 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC15.4■□□□□ 0.06
SHOX2O60902 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.4■□□□□ 0.06
SHOX2O60902 AL607033.1-201ENST00000623900 1599 ntBASIC15.4■□□□□ 0.06
SHOX2O60902 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.4■□□□□ 0.06
SHOX2O60902 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHOX2O60902 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
SHOX2O60902 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC15.4■□□□□ 0.06
SHOX2O60902 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
SHOX2O60902 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.39■□□□□ 0.05
SHOX2O60902 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
SHOX2O60902 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SHOX2O60902 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC15.39■□□□□ 0.05
SHOX2O60902 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
SHOX2O60902 RBM17P3-201ENST00000417687 1192 ntBASIC15.39■□□□□ 0.05
SHOX2O60902 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.39■□□□□ 0.05
SHOX2O60902 FAM185BP-201ENST00000443595 716 ntBASIC15.39■□□□□ 0.05
SHOX2O60902 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.39■□□□□ 0.05
SHOX2O60902 AC008608.2-201ENST00000606089 416 ntBASIC15.39■□□□□ 0.05
SHOX2O60902 AL355877.3-201ENST00000622820 899 ntBASIC15.39■□□□□ 0.05
SHOX2O60902 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.39■□□□□ 0.05
SHOX2O60902 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.39■□□□□ 0.05
SHOX2O60902 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
SHOX2O60902 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 AL136982.4-201ENST00000437689 1740 ntBASIC15.39■□□□□ 0.05
SHOX2O60902 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SHOX2O60902 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC15.39■□□□□ 0.05
SHOX2O60902 AC012617.1-204ENST00000586340 2305 ntBASIC15.39■□□□□ 0.05
SHOX2O60902 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.39■□□□□ 0.05
SHOX2O60902 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
SHOX2O60902 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.39■□□□□ 0.05
SHOX2O60902 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
SHOX2O60902 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHOX2O60902 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.38■□□□□ 0.05
SHOX2O60902 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.38■□□□□ 0.05
SHOX2O60902 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
SHOX2O60902 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.38■□□□□ 0.05
SHOX2O60902 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
SHOX2O60902 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC15.38■□□□□ 0.05
SHOX2O60902 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SHOX2O60902 AC104457.1-201ENST00000401024 814 ntBASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms