Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 KRT8P12-202ENST00000472924 1397 ntBASIC16.02■□□□□ 0.16
CCDC188H7C350 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
CCDC188H7C350 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
CCDC188H7C350 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CCDC188H7C350 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CCDC188H7C350 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC188H7C350 AL592309.1-201ENST00000443127 649 ntBASIC16.02■□□□□ 0.16
CCDC188H7C350 TIMM8BP1-201ENST00000452384 211 ntBASIC16.02■□□□□ 0.16
CCDC188H7C350 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC188H7C350 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC188H7C350 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.02■□□□□ 0.16
CCDC188H7C350 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.02■□□□□ 0.16
CCDC188H7C350 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.16
CCDC188H7C350 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.02■□□□□ 0.16
CCDC188H7C350 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.02■□□□□ 0.16
CCDC188H7C350 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.02■□□□□ 0.16
CCDC188H7C350 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC16.02■□□□□ 0.16
CCDC188H7C350 FAM197Y3-203ENST00000618346 717 ntBASIC16.02■□□□□ 0.16
CCDC188H7C350 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC188H7C350 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CCDC188H7C350 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC188H7C350 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC16.02■□□□□ 0.15
CCDC188H7C350 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC188H7C350 AL359881.3-201ENST00000602640 1721 ntBASIC16.02■□□□□ 0.15
CCDC188H7C350 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
CCDC188H7C350 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC188H7C350 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
CCDC188H7C350 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
CCDC188H7C350 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC188H7C350 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.02■□□□□ 0.15
CCDC188H7C350 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
CCDC188H7C350 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
CCDC188H7C350 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
CCDC188H7C350 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CCDC188H7C350 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC188H7C350 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC188H7C350 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.01■□□□□ 0.15
CCDC188H7C350 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
CCDC188H7C350 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.01■□□□□ 0.15
CCDC188H7C350 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
CCDC188H7C350 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC188H7C350 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC188H7C350 AC074338.1-201ENST00000416825 156 ntBASIC16.01■□□□□ 0.15
CCDC188H7C350 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC188H7C350 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.01■□□□□ 0.15
CCDC188H7C350 TPT1P11-201ENST00000458482 498 ntBASIC16.01■□□□□ 0.15
CCDC188H7C350 AC009078.2-202ENST00000463353 338 ntBASIC16.01■□□□□ 0.15
CCDC188H7C350 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.01■□□□□ 0.15
CCDC188H7C350 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC188H7C350 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC188H7C350 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
CCDC188H7C350 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CCDC188H7C350 AC025181.2-201ENST00000606994 802 ntBASIC16.01■□□□□ 0.15
CCDC188H7C350 AC027601.4-201ENST00000611259 610 ntBASIC16.01■□□□□ 0.15
CCDC188H7C350 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CCDC188H7C350 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC188H7C350 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC188H7C350 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
CCDC188H7C350 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC188H7C350 KCP-203ENST00000610776 5108 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC188H7C350 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC188H7C350 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CCDC188H7C350 RDX-218ENST00000544551 4117 ntTSL 2 BASIC16■□□□□ 0.15
CCDC188H7C350 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC188H7C350 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC188H7C350 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms