Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 CDC23-208ENST00000505120 455 ntTSL 3 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 AL160191.2-201ENST00000603975 601 ntBASIC11.64□□□□□ -0.55
COL6A5A8TX70 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
COL6A5A8TX70 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 AC092171.3-201ENST00000610122 2651 ntBASIC11.64□□□□□ -0.55
COL6A5A8TX70 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
COL6A5A8TX70 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 AHCYP3-201ENST00000420053 1279 ntBASIC11.63□□□□□ -0.55
COL6A5A8TX70 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 AC004066.1-201ENST00000502488 802 ntBASIC11.63□□□□□ -0.55
COL6A5A8TX70 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC11.63□□□□□ -0.55
COL6A5A8TX70 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC11.63□□□□□ -0.55
COL6A5A8TX70 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 OLA1P2-201ENST00000395519 1264 ntBASIC11.63□□□□□ -0.55
COL6A5A8TX70 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 HERC2P11-201ENST00000562845 725 ntBASIC11.63□□□□□ -0.55
COL6A5A8TX70 AC100756.2-201ENST00000569537 736 ntBASIC11.63□□□□□ -0.55
COL6A5A8TX70 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 AC021305.1-201ENST00000520656 1514 ntBASIC11.63□□□□□ -0.55
COL6A5A8TX70 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
COL6A5A8TX70 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 MST1L-201ENST00000442552 2185 ntBASIC11.63□□□□□ -0.55
COL6A5A8TX70 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 CES3-203ENST00000543856 3178 ntTSL 2 BASIC11.63□□□□□ -0.55
COL6A5A8TX70 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC11.62□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms