Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 WARS-232ENST00000556645 2508 ntTSL 5 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC28.88■■■□□ 2.21
SHROOM4Q9ULL8 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 AC005740.2-201ENST00000511085 419 ntBASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 AP001002.3-201ENST00000623482 206 ntBASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 CDK7-214ENST00000626796 358 ntTSL 5 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC28.87■■■□□ 2.21
SHROOM4Q9ULL8 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 CFL1-206ENST00000527344 962 ntTSL 2 BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC28.86■■■□□ 2.21
SHROOM4Q9ULL8 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 AL139094.1-201ENST00000405549 1188 ntBASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 RN7SL818P-201ENST00000485099 259 ntBASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 MIR4754-201ENST00000582477 89 ntBASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 AC004466.1-201ENST00000599515 1080 ntBASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 BNIP3P13-201ENST00000599968 566 ntBASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 RN7SL725P-201ENST00000606439 259 ntBASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 AL513523.2-202ENST00000427283 2040 ntBASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 AL136309.1-201ENST00000403917 691 ntBASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 SLC16A6P1-201ENST00000413214 1059 ntBASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 FAM8A4P-201ENST00000435433 1213 ntBASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC28.85■■■□□ 2.21
SHROOM4Q9ULL8 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 MST1L-201ENST00000442552 2185 ntBASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC28.84■■■□□ 2.21
SHROOM4Q9ULL8 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC28.84■■■□□ 2.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms