Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SIX2Q9NPC8 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.46■□□□□ 0.22
SIX2Q9NPC8 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
SIX2Q9NPC8 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 AC098850.1-201ENST00000419919 790 ntBASIC16.45■□□□□ 0.22
SIX2Q9NPC8 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 RRP7BP-205ENST00000566851 833 ntBASIC16.45■□□□□ 0.22
SIX2Q9NPC8 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 SLC7A15P-201ENST00000424028 1363 ntBASIC16.45■□□□□ 0.22
SIX2Q9NPC8 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SIX2Q9NPC8 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 AL137783.1-201ENST00000623494 1896 ntBASIC16.44■□□□□ 0.22
SIX2Q9NPC8 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 MIR661-201ENST00000384842 89 ntBASIC16.44■□□□□ 0.22
SIX2Q9NPC8 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 SERBP1P5-201ENST00000510079 1181 ntBASIC16.44■□□□□ 0.22
SIX2Q9NPC8 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 AC099568.2-201ENST00000609194 695 ntBASIC16.44■□□□□ 0.22
SIX2Q9NPC8 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 SNX18-202ENST00000343017 3140 ntBASIC16.44■□□□□ 0.22
SIX2Q9NPC8 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX2Q9NPC8 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms